=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
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Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-2.3852099600000001 -4.5395668100000002 8.8927203199999987
6.2429502499999998 -9.0666770999999997 -2.5626442499999995
7.8860101699999996 4.5345842200000002 6.7078075399999992
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
10.265 11.302 11.302 94.072 79.946 88.282
In UNIT-cell, number of atoms: 2 2 8 total: 12
Inverse Matrix is:
-3.8233206408097263E-002 5.5002700438751780E-002 7.1699964954253959E-002
-4.8249478706719279E-002 -6.6933651522474227E-002 3.8394360748024318E-002
7.7566146051453275E-002 -1.9415520537828277E-002 3.8831001522314321E-002
In SUPER-cell, number of atoms: 18 18 72 total: 108
POSCAR_STRCT atoms = 108
Accepted radius = 11 with 108 atoms
====================================================================================================
/projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps
['Y', 'P', 'O']
elements: ['Y', 'P', 'O']
counts: [18, 18, 72]
solid atom IDs: 1:108
liquid atom IDs: 109:216
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 16620.839920
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = -17798.094690
Step reduced to 0.005
New scale = 1.0050000000000001
==============================
Iteration 3
Current scale = 1.0050000000000001
Pressure = -1571.168399
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.0050000000000001
==============================
Iteration 1
Current scale = 1.0050000000000001
Pressure = 14783.994870
New scale = 1.0150000000000001
==============================
Iteration 2
Current scale = 1.0150000000000001
Pressure = -19494.260810
Step reduced to 0.005
New scale = 1.0100000000000002
==============================
Iteration 3
Current scale = 1.0100000000000002
Pressure = -2917.518890
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0100000000000002
==============================
Iteration 1
Current scale = 1.0100000000000002
Pressure = 25263.013100
New scale = 1.0200000000000002
==============================
Iteration 2
Current scale = 1.0200000000000002
Pressure = -6485.422570
Step reduced to 0.005
New scale = 1.0150000000000003
==============================
Iteration 3
Current scale = 1.0150000000000003
Pressure = 7477.692130
Step reduced to 0.0025
New scale = 1.0175000000000003
==============================
Iteration 4
Current scale = 1.0175000000000003
Pressure = -539.406830
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.0175000000000003
==============================
Iteration 1
Current scale = 1.0175000000000003
Pressure = 67954.847200
New scale = 1.0275000000000003
==============================
Iteration 2
Current scale = 1.0275000000000003
Pressure = 47301.613800
New scale = 1.0375000000000003
==============================
Iteration 3
Current scale = 1.0375000000000003
Pressure = 33113.410500
New scale = 1.0475000000000003
==============================
Iteration 4
Current scale = 1.0475000000000003
Pressure = 16852.382470
New scale = 1.0575000000000003
==============================
Iteration 5
Current scale = 1.0575000000000003
Pressure = 7943.835870
New scale = 1.0675000000000003
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1514.74 K
Uncertainty = 7255.41 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1514.7393730000001 7263.8185341240087
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1750.0000000000000 K
1750, 1750, 1
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1000 ...
Using closest available scale or default: 1.0675000000000003
==============================
Iteration 1
Current scale = 1.0675000000000003
Pressure = -17278.939200
Step reduced to 0.005
New scale = 1.0625000000000004
==============================
Iteration 2
Current scale = 1.0625000000000004
Pressure = -15315.180830
New scale = 1.0575000000000006
==============================
Iteration 3
Current scale = 1.0575000000000006
Pressure = -8603.380530
New scale = 1.0525000000000007
==============================
Iteration 4
Current scale = 1.0525000000000007
Pressure = -523.591540
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1771.86 K
Uncertainty = 6964.42 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1771.8571099999999 6973.1200696633914
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1875.0000000000000 K
1875, 1875, 1
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1000 ...
Using closest available scale or default: 1.0675000000000003
==============================
Iteration 1
Current scale = 1.0675000000000003
Pressure = -7508.766670
Step reduced to 0.005
New scale = 1.0625000000000004
==============================
Iteration 2
Current scale = 1.0625000000000004
Pressure = -3415.536182
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
1875 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1793.55 K
Uncertainty = 6981.23 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1793.5516874999998 6986.0744164691096
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
1875 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1750.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
1750, 1750, 4
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1100 ...
Using scale from current temperature folder: 1.0525000000000007
==============================
Iteration 1
Current scale = 1.0525000000000007
Pressure = -3985.713820
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1200 ...
Using scale from current temperature folder: 1.0525000000000007
==============================
Iteration 1
Current scale = 1.0525000000000007
Pressure = -2876.769040
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1300 ...
Using scale from current temperature folder: 1.0525000000000007
==============================
Iteration 1
Current scale = 1.0525000000000007
Pressure = -11720.932409
Step reduced to 0.005
New scale = 1.0475000000000008
==============================
Iteration 2
Current scale = 1.0475000000000008
Pressure = 1609.057968
Converged!
Now running full trajectory...
Completed!
==============================
1875, 1875, 4
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1100 ...
Using scale from current temperature folder: 1.0625000000000004
==============================
Iteration 1
Current scale = 1.0625000000000004
Pressure = 4856.342910
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1200 ...
Using scale from current temperature folder: 1.0625000000000004
==============================
Iteration 1
Current scale = 1.0625000000000004
Pressure = 4140.168787
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1300 ...
Using scale from current temperature folder: 1.0625000000000004
==============================
Iteration 1
Current scale = 1.0625000000000004
Pressure = -1592.926210
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 0 | 4 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1812.13 K
Uncertainty = 33.36 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1812.0749292422618 33.287865189910853
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 4 0 4
1875 0 4 4
2000 0 1 1
current fit
1 1812.0749292422618 33.287865189910853
possibilities:
current fit
0 1812.0749292422618 33.287865189910853
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ---
1000/1 -8.170053 0.127702 992.542440 12.625781 2639.228836 -0.00000008 down 5.920e-07
1500/1 -8.068290 0.193574 1504.518475 12.791630 5910.659821 -0.00000064 down 2.350e-07
1750/1 -7.915322 0.227832 1770.784060 14.564385 4228.421898 -0.00000343 down 2.110e-06
1750/2 -7.934783 0.223824 1739.629380 14.364986 -3651.025730 -0.00000074 down 3.000e-06
1750/3 -7.901052 0.226604 1761.236860 14.175923 1873.690050 -0.00000287 down 6.210e-07
1750/4 -7.903536 0.226566 1760.942300 14.403044 -5611.846718 0.00000044 up 8.860e-07
1875/1 -7.856432 0.241798 1879.330125 15.341888 4168.153565 -0.00000631 down 4.320e-06
1875/2 -7.838597 0.242701 1886.350970 15.346893 2597.703915 0.00000362 up 4.770e-06
1875/3 -7.842719 0.239327 1860.123265 15.765404 1851.457853 0.00000089 up 3.510e-06
1875/4 -7.867866 0.236884 1841.139755 14.822789 -6068.637671 -0.00000058 down 5.720e-06
2000/1 -7.826257 0.256002 1989.729490 15.394441 4954.604320 0.00000117 up 1.010e-05
500/1 -8.238673 0.065142 506.304408 12.483041 -345.123114 0.00000000 up 3.320e-09
======================================================================================================================================================
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 0 | 4 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1812.03 K
Uncertainty = 33.28 K
====================================
Wrote /projects/bhin/hqj/sluschi_auto/d8026430-6a99-4cf2-8051-87db3ce6fc28/Y2P2O8/Dir_lammps/cost_table.out
Collected 40 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 12
Total log files (incl. subruns) = 40
Total wall time = 27:44:36
Total seconds = 99876
Total GPU hours = 27.74
====================================
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 1812.02959772192
STD_LMP = 33.28286970232025
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -7.91878229
PBE_energy_eV_per_atom = -7.94222828
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -7.85424063
PBE_energy_eV_per_atom = -7.87899824
DH_LMP_raw_PBE = 0.06454167 eV/atom
DH_LMP_PBE = 0.04168308 eV/atom
DH_PBE = 0.04037146 eV/atom
Cp_solid_PBE = 2.35208608e-04 eV/atom/K
Cp_liquid_PBE = 1.30528704e-04 eV/atom/K
Cp_avg_PBE = 1.82868656e-04 eV/atom/K
DeltaT_PBE = 125.00 K
DH_raw_PBE = 0.06323004 eV/atom
MT_PBE = 1755.01108399 K
Y2 P2 O8 1.0 5.5047234600000001 0.0024913100000000 -1.5825190099999999 -3.1208212500000001 4.5345842000000003 -1.5825190200000001 -0.0013077500000000 -0.0024913000000000 5.7276822899999997 Y P O 2 2 8 direct 0.1250000000000000 0.8750000000000000 0.2500000000000000 Y 0.8750000000000000 0.1250000000000000 0.7500000000000000 Y 0.3750000000000000 0.6250000000000000 0.7500000000000000 P 0.6250000000000000 0.3750000000000000 0.2500000000000000 P 0.7839455200000000 0.3592978400000000 0.0753533200000000 O 0.7085922000000000 0.7839455200000000 0.9246466800000001 O 0.3592978400000000 0.7839455200000000 0.5753533199999999 O 0.7839455200000000 0.7085922000000000 0.4246466800000000 O 0.2914078000000000 0.2160544800000000 0.0753533200000000 O 0.2160544800000000 0.6407021600000000 0.9246466800000001 O 0.2160544800000000 0.2914078000000000 0.5753533199999999 O 0.6407021600000000 0.2160544800000000 0.4246466800000000 O
No output files have been received yet.