=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 14
*** Generate a supercell from the current unitcell ***
The supercell is:
0.0000000000000000 9.6572249400000008 -9.6572249400000008
0.0000000000000000 9.6572249400000008 9.6572249400000008
14.485837410000002 0.0000000000000000 0.0000000000000000
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
13.657 13.657 14.486 90.000 90.000 90.000
In UNIT-cell, number of atoms: 4 8 total: 12
Inverse Matrix is:
0.0000000000000000 -0.0000000000000000 6.9032943812393638E-002
5.1774707859295235E-002 5.1774707859295235E-002 -0.0000000000000000
-5.1774707859295235E-002 5.1774707859295235E-002 0.0000000000000000
In SUPER-cell, number of atoms: 96 192 total: 288
POSCAR_STRCT atoms = 288
Accepted radius = 14 with 288 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps
['Mg', 'O']
elements: ['Mg', 'O']
counts: [96, 192]
solid atom IDs: 1:288
liquid atom IDs: 289:576
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 57768.344300
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = 24046.479400
New scale = 1.02
==============================
Iteration 3
Current scale = 1.02
Pressure = -8308.490870
Step reduced to 0.005
New scale = 1.0150000000000001
==============================
Iteration 4
Current scale = 1.0150000000000001
Pressure = 6828.762209
Step reduced to 0.0025
New scale = 1.0175
==============================
Iteration 5
Current scale = 1.0175
Pressure = 452.134131
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.0175
==============================
Iteration 1
Current scale = 1.0175
Pressure = 63647.427700
New scale = 1.0275
==============================
Iteration 2
Current scale = 1.0275
Pressure = 36020.719740
New scale = 1.0375
==============================
Iteration 3
Current scale = 1.0375
Pressure = 7257.392020
New scale = 1.0475
==============================
Iteration 4
Current scale = 1.0475
Pressure = 3720.741468
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0475
==============================
Iteration 1
Current scale = 1.0475
Pressure = 23418.048000
New scale = 1.0575
==============================
Iteration 2
Current scale = 1.0575
Pressure = 12631.176100
New scale = 1.0675000000000001
==============================
Iteration 3
Current scale = 1.0675000000000001
Pressure = -2833.199150
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.0675000000000001
==============================
Iteration 1
Current scale = 1.0675000000000001
Pressure = 16338.728000
New scale = 1.0775000000000001
==============================
Iteration 2
Current scale = 1.0775000000000001
Pressure = 10883.368020
New scale = 1.0875000000000001
==============================
Iteration 3
Current scale = 1.0875000000000001
Pressure = -3024.508520
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 2
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1007.98 K
Uncertainty = 7585.77 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1007.9760405000000 7607.2004694425368
500 1 0 1
1000 1 0 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1250.0000000000000 K
1250, 1250, 1
Adaptive temp step = 100
1250
Start running job (temp, id) 1250 1000 ...
Using closest available scale or default: 1.0475
==============================
Iteration 1
Current scale = 1.0475
Pressure = 17467.062300
New scale = 1.0575
==============================
Iteration 2
Current scale = 1.0575
Pressure = -2359.685400
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 1 | 0 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1274.99 K
Uncertainty = 7349.31 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1274.9873009999999 7342.1805685417094
500 1 0 1
1000 1 0 1
1250 1 0 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1375.0000000000000 K
1375, 1375, 1
Adaptive temp step = 100
1375
Start running job (temp, id) 1375 1000 ...
Using closest available scale or default: 1.0675000000000001
==============================
Iteration 1
Current scale = 1.0675000000000001
Pressure = -2982.403420
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 3
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 1 | 0 | 1
1375 | 0 | 1 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1274.68 K
Uncertainty = 7336.38 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1274.6813775000001 7349.5100830350502
500 1 0 1
1000 1 0 1
1250 1 0 1
1375 0 1 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
1250, 1250, 4
Adaptive temp step = 100
1250
Start running job (temp, id) 1250 1100 ...
Using scale from current temperature folder: 1.0575
==============================
Iteration 1
Current scale = 1.0575
Pressure = -1629.906967
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1250 1200 ...
Using scale from current temperature folder: 1.0575
==============================
Iteration 1
Current scale = 1.0575
Pressure = -4824.151800
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1250 1300 ...
Using scale from current temperature folder: 1.0575
==============================
Iteration 1
Current scale = 1.0575
Pressure = 1164.562373
Converged!
Now running full trajectory...
Completed!
==============================
1375, 1375, 4
Adaptive temp step = 100
1375
Start running job (temp, id) 1375 1100 ...
Using scale from current temperature folder: 1.0675000000000001
==============================
Iteration 1
Current scale = 1.0675000000000001
Pressure = -7321.264981
Step reduced to 0.005
New scale = 1.0625000000000002
==============================
Iteration 2
Current scale = 1.0625000000000002
=== DFT corrections begin ===
=== PBE correction ===
N rows with PBE energy = 0
MT_LMP = 1249.4763017515504
STD_LMP = 34.882350832950046
SOLID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
N_solid_PBE = 0
SEM_lammps_solid_PBE = N/A
SEM_PBE_solid = N/A
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
N_liquid_PBE = 0
SEM_lammps_liquid_PBE = N/A
SEM_PBE_liquid = N/A
DH_LMP_raw_PBE = N/A
DH_LMP_PBE = N/A
DH_PBE = N/A
STD_DH_LMP_PBE = N/A
STD_DH_PBE = N/A
COV_DH_PBE_LMP = N/A
MT_PBE = N/A
STD_PBE = N/A
=== R2SCAN correction ===
N rows with R2SCAN energy = 0
MT_LMP = 1249.4763017515504
STD_LMP = 34.882350832950046
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
N_solid_R2SCAN = 0
SEM_lammps_solid_R2SCAN = N/A
SEM_R2SCAN_solid = N/A
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
N_liquid_R2SCAN = 0
SEM_lammps_liquid_R2SCAN = N/A
SEM_R2SCAN_liquid = N/A
DH_LMP_raw_R2SCAN = N/A
DH_LMP_R2SCAN = N/A
DH_R2SCAN = N/A
STD_DH_LMP_R2SCAN = N/A
STD_DH_R2SCAN = N/A
COV_DH_R2SCAN_LMP = N/A
MT_R2SCAN = N/A
STD_R2SCAN = N/A
=== DFT corrections end ===
Pressure = 2805.874320
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1375 1200 ...
Using scale from current temperature folder: 1.0625000000000002
==============================
Iteration 1
Current scale = 1.0625000000000002
Pressure = 2088.537620
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1375 1300 ...
Using scale from current temperature folder: 1.0625000000000002
==============================
Iteration 1
Current scale = 1.0625000000000002
Pressure = 3122.651450
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 8
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 2 | 2 | 4
1375 | 0 | 4 | 4
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1139.66 K
Uncertainty = 228.26 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1140.6696258776813 228.01043070989635
500 1 0 1
1000 1 0 1
1250 2 2 4
1375 0 4 4
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1125.0000000000000 K
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
next job: 1 MD duplicate(s) at 1125.0000000000000 K
1125, 1125, 1
Adaptive tem5
Start running job (temp, id) 1125 1000 ...
Using closest available scale or default: 1.0475
==============================
Iteration 1
Current scale = 1.0475
Pressure = 125.487960
Converged!
Now running full trajectory...
Completed!
==============================
1250, 1250, 4
Adaptive temp step = 100
1250
1375, 1375, 4
Adaptive temp step = 100
1375
1125, 1125, 1
Adaptive temp step = 100
1125
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 8
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1125 | 1 | 0 | 1
1250 | 2 | 2 | 4
1375 | 0 | 4 | 4
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1217.06 K
Uncertainty = 100.13 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1216.3834332764793 100.74320576064615
500 1 0 1
1000 1 0 1
1125 1 0 1
1250 2 2 4
1375 0 4 4
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1125.0000000000000 K
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
next job: 4 MD duplicate(s) at 1125.0000000000000 K
next job: 4 MD duplicate(s) at 1250.0000000000000 K
1125, 1125, 4
Adaptive temp step = 100
1125
Start running job (temp, id) 1125 1100 ...
Using scale from current temperature folder: 1.0475
==============================
Iteration 1
Current scale = 1.0475
Pressure = 6368.037660
New scale = 1.0575
==============================
Iteration 2
Current scale = 1.0575
Pressure = -10033.787768
Step reduced to 0.005
New scale = 1.0525000000000002
==============================
Iteration 3
Current scale = 1.0525000000000002
Pressure = -3765.668750
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1125 1200 ...
Using scale from current temperature folder: 1.0525000000000002
==============================
Iteration 1
Current scale = 1.0525000000000002
Pressure = -673.387700
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1125 1300 ...
Using scale from current temperature folder: 1.0525000000000002
==============================
Iteration 1
Current scale = 1.0525000000000002
Pressure = 1419.523112
Converged!
Now running full trajectory...
Completed!
==============================
1250, 1250, 4
Adaptive temp step = 100
1250
1250, 1250, 4
Adaptive temp step = 100
1250
1375, 1375, 4
Adaptive temp step = 100
1375
1125, 1125, 4
Adaptive temp step = 100
1125
1250, 1250, 4
Adaptive temp step = 100
1250
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 16 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 8
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1125 | 4 | 0 | 4
1250 | 2 | 2 | 4
1375 | 0 | 4 | 4
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1249.56 K
Uncertainty = 34.84 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1249.5479972319647 35.016926933194334
500 1 0 1
1000 1 0 1
1125 4 0 4
1250 2 2 4
1375 0 4 4
1500 0 1 1
2000 0 1 1
current fit
1 1249.5479972319647 35.016926933194334
possibilities:
current fit
0 1249.5479972319647 35.016926933194334
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ------
1000/1 -5.246812 0.128278 994.124547 11.351509 -4968.422854 -0.00000031 down 1.230e-07 P1 (1)
1125/1 -5.216997 0.145525 1127.786680 11.749339 -1829.045362 0.00000065 up 1.560e-06 P1 (1)
1125/2 -5.205495 0.144229 1117.747780 11.729830 -5036.831969 0.00000062 up 2.080e-07 P1 (1)
1125/3 -5.211255 0.145288 1125.950950 11.625398 -1267.137289 0.00000091 up 1.700e-06 P1 (1)
1125/4 -5.193609 0.144643 1120.955780 11.803767 453.581146 0.00000199 up 2.960e-06 P1 (1)
1250/1 -5.173443 0.159703 1237.666480 12.036475 -1983.945988 0.00000106 up 2.270e-06 P1 (1)
1250/2 -5.176450 0.160790 1246.087800 11.861971 2158.905773 0.00000222 up 6.140e-06 P1 (1)
1250/3 -5.178928 0.160796 1246.135610 11.788313 -1881.540761 0.00000035 up 7.280e-07 P1 (1)
1250/4 -5.163995 0.159882 1239.051370 12.052422 -3614.051101 0.00000368 up 5.440e-06 P1 (1)
1375/1 -5.131541 0.177239 1373.567205 12.390173 3174.860504 0.00000126 up 4.230e-06 P1 (1)
1375/2 -5.135024 0.178373 1382.353530 12.429356 4691.558168 0.00000287 up 3.510e-06 P1 (1)
1375/3 -5.137623 0.176516 1367.960320 12.235124 -804.028188 0.00000126 up 3.240e-06 P1 (1)
1375/4 -5.129459 0.176184 1365.391640 12.426493 4587.625136 0.00000380 up 6.810e-06 P1 (1)
1500/1 -5.104061 0.193048 1496.078240 12.415036 8159.122515 0.00000361 up 7.630e-06 P1 (1)
2000/1 -4.983706 0.258034 1999.711800 13.730067 18068.240200 0.00000063 up 6.810e-05 P1 (1)
500/1 -5.387782 0.064496 499.833704 10.219491 -1015.280805 -0.00000062 down 4.220e-09 P1 (1)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/summary.out
Collected 16 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 8
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1125 | 4 | 0 | 4
1250 | 2 | 2 | 4
1375 | 0 | 4 | 4
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1249.48 K
Uncertainty = 34.88 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/a9964e5a-2678-42ad-beae-f8e8d7e72b4a/Mg4O8/Dir_lammps/cost_table.out
Collected 47 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 16
Total log files (incl. subruns) = 47
Total wall time = 3:48:43
Total seconds = 13723
Total GPU hours = 3.81
====================================
Mg4 O8 1.0 4.8286124700000004 -0.0000000000000000 0.0000000000000000 -0.0000000000000000 4.8286124700000004 -0.0000000000000000 0.0000000000000000 -0.0000000000000000 4.8286124700000004 Mg O 4 8 direct -0.0000000000000000 0.5000000000000000 0.5000000000000000 Mg 0.5000000000000000 0.5000000000000000 -0.0000000000000000 Mg 0.5000000000000000 -0.0000000000000000 0.5000000000000000 Mg -0.0000000000000000 -0.0000000000000000 -0.0000000000000000 Mg 0.4105755600000000 0.0894244400000000 0.9105755600000000 O 0.0894244400000000 0.9105755600000000 0.4105755600000000 O 0.9105755600000000 0.4105755600000000 0.0894244400000000 O 0.5894244400000000 0.5894244400000000 0.5894244400000000 O 0.4105755600000000 0.4105755600000000 0.4105755600000000 O 0.0894244400000000 0.5894244400000000 0.9105755600000000 O 0.9105755600000000 0.0894244400000000 0.5894244400000000 O 0.5894244400000000 0.9105755600000000 0.0894244400000000 O
No output files have been received yet.