=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
0.0000000000000000 0.0000000000000000 -10.908020080000000
0.0000000000000000 10.908020080000000 0.0000000000000000
10.908020080000000 0.0000000000000000 0.0000000000000000
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
10.908 10.908 10.908 90.000 90.000 90.000
In UNIT-cell, number of atoms: 1 2 total: 3
Inverse Matrix is:
0.0000000000000000 -0.0000000000000000 9.1675665488873945E-002
0.0000000000000000 9.1675665488873945E-002 -0.0000000000000000
-9.1675665488873945E-002 0.0000000000000000 0.0000000000000000
In SUPER-cell, number of atoms: 32 64 total: 96
POSCAR_STRCT atoms = 96
Accepted radius = 11 with 96 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps
['U', 'O']
elements: ['U', 'O']
counts: [32, 64]
solid atom IDs: 1:96
liquid atom IDs: 97:192
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -5257.362030
Step reduced to 0.005
New scale = 0.995
==============================
Iteration 2
Current scale = 0.995
Pressure = 17984.156270
Step reduced to 0.0025
New scale = 0.9974999999999999
==============================
Iteration 3
Current scale = 0.9974999999999999
Pressure = 6240.862110
New scale = 0.9999999999999999
==============================
Iteration 4
Current scale = 0.9999999999999999
Pressure = -5259.378190
Step reduced to 0.00125
New scale = 0.9987499999999999
==============================
Iteration 5
Current scale = 0.9987499999999999
Pressure = 434.448590
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 0.9987499999999999
==============================
Iteration 1
Current scale = 0.9987499999999999
Pressure = 53992.780400
New scale = 1.0087499999999998
==============================
Iteration 2
Current scale = 1.0087499999999998
Pressure = 14457.517149
New scale = 1.0187499999999998
==============================
Iteration 3
Current scale = 1.0187499999999998
Pressure = -27771.925300
Step reduced to 0.005
New scale = 1.01375
==============================
Iteration 4
Current scale = 1.01375
Pressure = -10376.357814
New scale = 1.00875
==============================
Iteration 5
Current scale = 1.00875
Pressure = 5200.526520
Step reduced to 0.0025
New scale = 1.01125
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.01125
==============================
Iteration 1
Current scale = 1.01125
Pressure = 37109.842900
New scale = 1.02125
==============================
Iteration 2
Current scale = 1.02125
Pressure = -5332.692665
Step reduced to 0.005
New scale = 1.01625
==============================
Iteration 3
Current scale = 1.01625
Pressure = 7549.174460
Step reduced to 0.0025
New scale = 1.01875
==============================
Iteration 4
Current scale = 1.01875
Pressure = 8831.697261
New scale = 1.02125
==============================
Iteration 5
Current scale = 1.02125
Pressure = -9619.555040
Step reduced to 0.00125
New scale = 1.02
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.02
==============================
Iteration 1
Current scale = 1.02
Pressure = 40123.750840
New scale = 1.03
==============================
Iteration 2
Current scale = 1.03
Pressure = 15069.109500
New scale = 1.04
==============================
Iteration 3
Current scale = 1.04
Pressure = -6675.054744
Step reduced to 0.005
New scale = 1.0350000000000001
==============================
Iteration 4
Current scale = 1.0350000000000001
Pressure = 5241.434640
Step reduced to 0.0025
New scale = 1.0375
==============================
Iteration 5
Current scale = 1.0375
Pressure = 7884.795648
New scale = 1.04
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6605.45 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6620.0487797222731
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = 43315.694500
New scale = 1.05
==============================
Iteration 2
Current scale = 1.05
Pressure = 15998.093052
New scale = 1.06
==============================
Iteration 3
Current scale = 1.06
Pressure = 4522.651040
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2050.41 K
Uncertainty = 10831.20 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2050.4090095999995 10815.684339073201
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2400.0000000000000 K
2400, 2400, 1
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1000 ...
Using closest available scale or default: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = 17253.224300
New scale = 1.05
==============================
Iteration 2
Current scale = 1.05
Pressure = 4745.001180
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 0 | 1 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2049.89 K
Uncertainty = 10872.04 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2049.8939384000000 10854.950352374351
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 0 1 1
2800 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2000.0000000000000 K
next job: 4 MD duplicate(s) at 2400.0000000000000 K
2000, 2000, 4
Adaptive temp step = 100
2000
Start running job (temp, id) 2000 1100 ...
Using scale from current temperature folder: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = -5370.877170
Step reduced to 0.005
New scale = 1.0350000000000001
==============================
Iteration 2
Current scale = 1.0350000000000001
Pressure = 13941.104340
Step reduced to 0.0025
New scale = 1.0375
==============================
Iteration 3
Current scale = 1.0375
Pressure = 15219.604030
New scale = 1.04
==============================
Iteration 4
Current scale = 1.04
Pressure = -3097.976780
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1200 ...
Using scale from current temperature folder: 1.04
===
N rows with PBE energy = 0
MT_LMP = 2049.8939384
STD_LMP = 10854.950352374351
SOLID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
DH_LMP_raw_PBE = N/A
DH_LMP_PBE = N/A
DH_PBE = N/A
MT_PBE = N/A
=== R2SCAN correction ===
N rows with R2SCAN energy = 0
MT_LMP = 2049.8939384
STD_LMP = 10854.950352374351
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
DH_LMP_raw_R2SCAN = N/A
DH_LMP_R2SCAN = N/A
DH_R2SCAN = N/A
MT_R2SCAN = N/A
=== DFT corrections end ===
==============================
Iteration 1
Current scale = 1.04
Pressure = 3661.932450
Converged!
Now running full trajectory...
=== DFT corrections begin ===
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 2197.353766746411
STD_LMP = 107.94794500782557
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -10.02716341
PBE_energy_eV_per_atom = -9.99828101
N_solid_PBE = 4
SEM_lammps_solid_PBE = 6.10153165e-03 eV/atom
SEM_PBE_solid = 7.38538431e-03 eV/atom
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -9.71936094
PBE_energy_eV_per_atom = -9.71860245
N_liquid_PBE = 4
SEM_lammps_liquid_PBE = 1.67153362e-02 eV/atom
SEM_PBE_liquid = 1.77798066e-02 eV/atom
DH_LMP_raw_PBE = 0.30780247 eV/atom
DH_LMP_PBE = 0.30780247 eV/atom
DH_PBE = 0.27967856 eV/atom
STD_DH_LMP_PBE = 1.77941326e-02 eV/atom
STD_DH_PBE = 1.92526731e-02 eV/atom
COV_DH_PBE_LMP = 3.41304109e-04 (eV/atom)^2
DH_raw_PBE = 0.27967856 eV/atom
MT_PBE = 1996.58154574 K
STD_PBE = 101.11401481 K
=== R2SCAN correction ===
N rows with R2SCAN energy = 8
MT_LMP = 2197.353766746411
STD_LMP = 107.94794500782557
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = -10.02716341
R2SCAN_energy_eV_per_atom = -33.82555132
N_solid_R2SCAN = 4
SEM_lammps_solid_R2SCAN = 6.10153165e-03 eV/atom
SEM_R2SCAN_solid = 8.05278809e-03 eV/atom
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = -9.71936094
R2SCAN_energy_eV_per_atom = -33.50574373
N_liquid_R2SCAN = 4
SEM_lammps_liquid_R2SCAN = 1.67153362e-02 eV/atom
SEM_R2SCAN_liquid = 1.88429360e-02 eV/atom
DH_LMP_raw_R2SCAN = 0.30780247 eV/atom
DH_LMP_R2SCAN = 0.30780247 eV/atom
DH_R2SCAN = 0.31980759 eV/atom
STD_DH_LMP_R2SCAN = 1.77941326e-02 eV/atom
STD_DH_R2SCAN = 2.04915503e-02 eV/atom
COV_DH_R2SCAN_LMP = 3.62208138e-04 (eV/atom)^2
DH_raw_R2SCAN = 0.31980759 eV/atom
MT_R2SCAN = 2283.05642299 K
STD_R2SCAN = 114.19465739 K
=== DFT corrections end ===
Completed!
==============================
Start running job (temp, id) 2000 1300 ...
Using scale from current temperature folder: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = 3601.422570
Converged!
Now running full trajectory...
Completed!
==============================
2400, 2400, 4
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1100 ...
Using scale from current temperature folder: 1.05
==============================
Iteration 1
Current scale = 1.05
Pressure = 13781.189600
New scale = 1.06
==============================
Iteration 2
Current scale = 1.06
Pressure = -4769.128860
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1200 ...
Using scale from current temperature folder: 1.06
==============================
Iteration 1
Current scale = 1.06
Pressure = -2991.319026
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1300 ...
Using scale from current temperature folder: 1.06
==============================
Iteration 1
Current scale = 1.06
Pressure = -249.431620
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 4 | 0 | 4
2400 | 0 | 4 | 4
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2196.97 K
Uncertainty = 107.56 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2197.9189095626903 107.60279607922593
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 4 0 4
2400 0 4 4
2800 0 1 1
current fit
1 2197.9189095626903 107.60279607922593
possibilities:
current fit
0 2197.9189095626903 107.60279607922593
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ -----------
1000/1 -10.191148 0.127486 991.440548 13.885663 -5177.912641 0.00000093 up 3.660e-08 P1 (1)
1500/1 -10.135617 0.194087 1509.385610 14.054003 9871.083795 -0.00000235 down 6.740e-08
2000/1 -10.014076 0.259622 2019.039270 14.555165 12501.441162 -0.00000581 down 1.230e-07 P1 (1)
2000/2 -9.979372 0.261102 2030.549165 15.022577 -10803.952415 -0.00001623 down 3.150e-07 P1 (1)
2000/3 -10.011061 0.259839 2020.725855 14.777947 -1700.832210 -0.00001517 down 1.080e-07 P1 (1)
2000/4 -10.030464 0.258937 2013.710835 14.522808 10768.019333 -0.00000920 down 3.180e-08 P1 (1)
2400/1 -9.758964 0.310812 2417.135485 16.478188 -12785.638602 0.00000465 up 7.860e-06 P1 (1)
2400/2 -9.702730 0.305935 2379.207930 16.884596 9770.107121 0.00000643 up 1.800e-05 P1 (1)
2400/3 -9.698393 0.304422 2367.438325 16.865660 15882.179059 0.00000943 up 2.280e-05 P1 (1)
2400/4 -9.700237 0.305623 2376.784575 16.870907 -38.984062 0.00000733 up 1.280e-05 P1 (1)
2800/1 -9.601523 0.358182 2785.525710 17.582482 11711.333240 0.00000882 up 5.840e-05 P1 (1)
500/1 -10.287229 0.064527 501.814145 13.519444 -132.205878 0.00000004 up 1.030e-08 Fm-3m (225)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 4 | 0 | 4
2400 | 0 | 4 | 4
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2197.35 K
Uncertainty = 107.95 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/9996b93d-86c7-4e33-a57c-359a1a819e7e/UO2/Dir_lammps/cost_table.out
Collected 47 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 12
Total log files (incl. subruns) = 47
Total wall time = 1:29:59
Total seconds = 5399
Total GPU hours = 1.50
====================================
U1 O2 1.0 0.0000000000000000 2.7270050200000000 2.7270050200000000 2.7270050200000000 -0.0000000000000000 2.7270050200000000 2.7270050200000000 2.7270050200000000 0.0000000000000000 U O 1 2 direct 0.5000000000000000 0.5000000000000000 0.5000000000000000 U 0.2500000000000000 0.2500000000000000 0.2500000000000000 O 0.7500000000000000 0.7500000000000000 0.7500000000000000 O
No output files have been received yet.