=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 14
*** Generate a supercell from the current unitcell ***
The supercell is:
0.0000000000000000 0.0000000000000000 -14.525995399999999
-1.9599999996344764E-006 13.171457859999999 0.0000000000000000
15.209088400000001 1.9599999999999999E-006 0.0000000000000000
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
14.526 13.171 15.209 90.000 90.000 90.000
In UNIT-cell, number of atoms: 6 8 total: 14
Inverse Matrix is:
0.0000000000000000 -9.7840584935191315E-009 6.5750160279164457E-002
0.0000000000000000 7.5921740070767005E-002 9.7840584916944868E-009
-6.8842098077492170E-002 0.0000000000000000 0.0000000000000000
In SUPER-cell, number of atoms: 120 160 total: 280
POSCAR_STRCT atoms = 280
Accepted radius = 14 with 280 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps
['Si', 'N']
elements: ['Si', 'N']
counts: [120, 160]
solid atom IDs: 1:280
liquid atom IDs: 281:560
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 6625.183464
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = -49652.296000
Step reduced to 0.005
New scale = 1.0050000000000001
==============================
Iteration 3
Current scale = 1.0050000000000001
Pressure = -22524.436100
New scale = 1.0000000000000002
==============================
Iteration 4
Current scale = 1.0000000000000002
Pressure = 6625.141980
Step reduced to 0.0025
New scale = 1.0025000000000002
==============================
Iteration 5
Current scale = 1.0025000000000002
Pressure = -7994.056670
Step reduced to 0.00125
New scale = 1.0012500000000002
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.0012500000000002
==============================
Iteration 1
Current scale = 1.0012500000000002
Pressure = 11858.365590
New scale = 1.0112500000000002
==============================
Iteration 2
Current scale = 1.0112500000000002
Pressure = -46635.921000
Step reduced to 0.005
New scale = 1.0062500000000003
==============================
Iteration 3
Current scale = 1.0062500000000003
Pressure = -18017.151500
New scale = 1.0012500000000004
==============================
Iteration 4
Current scale = 1.0012500000000004
Pressure = 11857.781660
Step reduced to 0.0025
New scale = 1.0037500000000004
==============================
Iteration 5
Current scale = 1.0037500000000004
Pressure = -3406.627309
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0037500000000004
==============================
Iteration 1
Current scale = 1.0037500000000004
Pressure = 25161.047800
New scale = 1.0137500000000004
==============================
Iteration 2
Current scale = 1.0137500000000004
Pressure = 2658.597866
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.0137500000000004
==============================
Iteration 1
Current scale = 1.0137500000000004
Pressure = 37905.737990
New scale = 1.0237500000000004
==============================
Iteration 2
Current scale = 1.0237500000000004
Pressure = 8751.503590
New scale = 1.0337500000000004
==============================
Iteration 3
Current scale = 1.0337500000000004
Pressure = -7123.221480
Step reduced to 0.005
New scale = 1.0287500000000005
==============================
Iteration 4
Current scale = 1.0287500000000005
Pressure = -3486.072390
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6617.03 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6634.4783940845000
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.0287500000000005
==============================
Iteration 1
Current scale = 1.0287500000000005
Pressure = 33128.444600
New scale = 1.0387500000000005
==============================
Iteration 2
Current scale = 1.0387500000000005
Pressure = 14963.933000
New scale = 1.0487500000000005
==============================
Iteration 3
Current scale = 1.0487500000000005
Pressure = -744.785005
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2859.99 K
Uncertainty = 9749.88 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2859.9890240000004 9741.7358386709566
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3600.0 K
3600, 3600, 1
Adaptive temp step = 100
3600
Start running job (temp, id) 3600 1000 ...
Using closest available scale or default: 1.0487500000000005
==============================
Iteration 1
Current scale = 1.0487500000000005
Pressure = 14412.370100
New scale = 1.0587500000000005
==============================
Iteration 2
Current scale = 1.0587500000000005
Pressure = -1159.292533
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2891.45 K
Uncertainty = 14290.37 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2891.4451080000003 14290.921947998419
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3200.0000000000000 K
3200, 3200, 1
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1000 ...
Using closest available scale or default: 1.0487500000000005
==============================
Iteration 1
Current scale = 1.0487500000000005
Pressure = 10032.496910
New scale = 1.0587500000000005
==============================
Iteration 2
Current scale = 1.0587500000000005
Pressure = -7237.527074
Step reduced to 0.005
New scale = 1.0537500000000006
==============================
Iteration 3
Current scale = 1.0537500000000006
Pressure = -3190.384630
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 7 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3200 | 0 | 1 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2889.21 K
Uncertainty = 14399.02 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2889.2136659999996 14368.011248852064
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3200 0 1 1
3600 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 4 MD duplicate(s) at 3200.0000000000000 K
2800, 2800, 4
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1100 ...
Using scale from current temperature folder: 1.0487500000000005
==============================
Iteration 1
Current scale = 1.0487500000000005
Pressure = -6602.314410
Step reduced to 0.005
New scale = 1.0437500000000006
==============================
Iteration 2
Current scale = 1.0437500000000006
Pressure = -794.745360
Converged!
Now running full trajectory...
=== DFT corrections begin ===
=== PBE correction ===
N rows with PBE energy = 0
MT_LMP = 2997.777511719075
STD_LMP = 106.84108875078452
SOLID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
N_solid_PBE = 0
SEM_lammps_solid_PBE = N/A
SEM_PBE_solid = N/A
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = N/A
PBE_energy_eV_per_atom = N/A
N_liquid_PBE = 0
SEM_lammps_liquid_PBE = N/A
SEM_PBE_liquid = N/A
DH_LMP_raw_PBE = N/A
DH_LMP_PBE = N/A
DH_PBE = N/A
STD_DH_LMP_PBE = N/A
STD_DH_PBE = N/A
COV_DH_PBE_LMP = N/A
MT_PBE = N/A
STD_PBE = N/A
=== R2SCAN correction ===
N rows with R2SCAN energy = 0
MT_LMP = 2997.777511719075
STD_LMP = 106.84108875078452
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
N_solid_R2SCAN = 0
SEM_lammps_solid_R2SCAN = N/A
SEM_R2SCAN_solid = N/A
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = N/A
R2SCAN_energy_eV_per_atom = N/A
N_liquid_R2SCAN = 0
SEM_lammps_liquid_R2SCAN = N/A
SEM_R2SCAN_liquid = N/A
DH_LMP_raw_R2SCAN = N/A
DH_LMP_R2SCAN = N/A
DH_R2SCAN = N/A
STD_DH_LMP_R2SCAN = N/A
STD_DH_R2SCAN = N/A
COV_DH_R2SCAN_LMP = N/A
MT_R2SCAN = N/A
STD_R2SCAN = N/A
=== DFT corrections end ===
Completed!
==============================
Start running job (temp, id) 2800 1200 ...
Using scale from current temperature folder: 1.0437500000000006
==============================
Iteration 1
Current scale = 1.0437500000000006
Pressure = -4285.776580
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2800 1300 ...
Using scale from current temperature folder: 1.0437500000000006
==============================
Iteration 1
Current scale = 1.0437500000000006
Pressure = -3422.725940
Converged!
Now running full trajectory...
Completed!
==============================
3200, 3200, 4
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1100 ...
Using scale from current temperature folder: 1.0537500000000006
==============================
Iteration 1
Current scale = 1.0537500000000006
Pressure = 1062.168720
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1200 ...
Using scale from current temperature folder: 1.0537500000000006
==============================
Iteration 1
Current scale = 1.0537500000000006
Pressure = 1531.404204
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1300 ...
Using scale from current temperature folder: 1.0537500000000006
==============================
Iteration 1
Current scale = 1.0537500000000006
Pressure = -10032.102141
Step reduced to 0.005
New scale = 1.0487500000000007
==============================
Iteration 2
Current scale = 1.0487500000000007
Pressure = 3702.931090
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 4 | 0 | 4
3200 | 0 | 4 | 4
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2997.55 K
Uncertainty = 106.46 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2997.4866250859554 106.61042098192026
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 4 0 4
3200 0 4 4
3600 0 1 1
current fit
1 2997.4866250859554 106.61042098192026
possibilities:
current fit
0 2997.4866250859554 106.61042098192026
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ ------------
1000/1 -8.045030 0.128998 999.753508 10.748178 -3302.994541 -0.00000007 down 8.210e-09 P6_3/m (176)
1500/1 -7.869326 0.191959 1487.718035 10.855517 9319.096940 -0.00000755 down 1.090e-07
2000/1 -7.668931 0.258511 2003.504670 11.365315 8831.776135 -0.00000470 down 6.510e-08 P1 (1)
2800/1 -7.466252 0.363694 2818.695990 11.918195 -3076.006582 -0.00001058 down 2.800e-06 P1 (1)
2800/2 -7.498167 0.365343 2831.470245 11.933188 -2130.727345 -0.00001189 down 1.110e-06 P1 (1)
2800/3 -7.499749 0.367023 2844.489885 11.797938 -6062.688946 -0.00001376 down 1.130e-06 P1 (1)
2800/4 -7.506173 0.362113 2806.440695 11.933685 -2210.737676 -0.00001181 down 1.040e-06 P1 (1)
3200/1 -7.304644 0.415480 3220.046225 12.397220 -3431.030704 -0.00000563 down 6.300e-06 P1 (1)
3200/2 -7.241130 0.414652 3213.627995 12.684813 -1479.704506 0.00000462 up 2.770e-05 P1 (1)
3200/3 -7.329260 0.414083 3209.212400 12.530053 -13664.709865 -0.00000646 down 5.550e-06 P1 (1)
3200/4 -7.308614 0.413205 3202.408600 12.514583 2018.838105 -0.00000942 down 1.510e-05 P1 (1)
3600/1 -7.102080 0.457787 3547.931775 12.809665 9404.494614 0.00000742 up 3.090e-05 P1 (1)
500/1 -8.113314 0.064641 500.982690 10.649258 1989.934349 0.00000003 up 5.810e-10 P6_3/m (176)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 4 | 0 | 4
3200 | 0 | 4 | 4
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2997.78 K
Uncertainty = 106.84 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/8ececdf0-9d81-41de-8dde-abf62948c8d1/Si6N8/Dir_lammps/cost_table.out
Collected 45 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 13
Total log files (incl. subruns) = 45
Total wall time = 3:02:25
Total seconds = 10945
Total GPU hours = 3.04
====================================
Si6 N8 1.0 7.6045442000000003 0.0000009800000000 0.0000000000000000 -3.8022730800000000 6.5857284399999996 -0.0000000000000000 -0.0000000000000000 -0.0000000000000000 2.9051990800000000 Si N 6 8 direct 0.2310824200000000 0.8249461400000000 0.7500000000000000 Si 0.4061362700000000 0.2310824200000000 0.2500000000000000 Si 0.8249461400000000 0.5938637300000000 0.2500000000000000 Si 0.1750538600000000 0.4061362700000000 0.7500000000000000 Si 0.5938637300000000 0.7689175800000000 0.7500000000000000 Si 0.7689175800000000 0.1750538600000000 0.2500000000000000 Si 0.3333330000000000 0.6666670000000000 0.7500000000000000 N 0.6666670000000000 0.3333330000000000 0.2500000000000000 N 0.9691944800000000 0.6698533900000000 0.7500000000000000 N 0.2993400800000000 0.9691944800000000 0.2500000000000000 N 0.6698533900000000 0.7006599200000000 0.2500000000000000 N 0.3301466100000000 0.2993400800000000 0.7500000000000000 N 0.0308055200000000 0.3301466100000000 0.2500000000000000 N 0.7006599200000000 0.0308055200000000 0.7500000000000000 N
No output files have been received yet.