=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
6.8653348200000011 2.3782224400000000 8.6526284400000009
-2.7461339100000011 -9.5128897600000002 4.3263142200000004
8.2384018000000001 -4.7564448800000001 -4.3263142200000004
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.299 10.805 10.450 88.017 86.206 91.898
In UNIT-cell, number of atoms: 2 total: 2
Inverse Matrix is:
4.8553106560732570E-002 -2.4276553280366285E-002 7.2829659841098862E-002
1.8688094073828508E-002 -7.9424399430976553E-002 -4.2048211283319537E-002
7.1911353473329331E-002 4.1092201984759616E-002 -4.6228727232854566E-002
In SUPER-cell, number of atoms: 90 total: 90
POSCAR_STRCT atoms = 90
Accepted radius = 11 with 90 atoms
====================================================================================================
/projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps
['Os']
elements: ['Os']
counts: [90]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -36717.850250
Step reduced to 0.005
New scale = 0.995
==============================
Iteration 2
Current scale = 0.995
Pressure = 5468.096034
Step reduced to 0.0025
New scale = 0.9974999999999999
==============================
Iteration 3
Current scale = 0.9974999999999999
Pressure = -15750.468400
Step reduced to 0.00125
New scale = 0.99625
==============================
Iteration 4
Current scale = 0.99625
Pressure = -5171.646370
New scale = 0.995
==============================
Iteration 5
Current scale = 0.995
Pressure = 5468.096034
Step reduced to 0.000625
New scale = 0.995625
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 0.995625
==============================
Iteration 1
Current scale = 0.995625
Pressure = 22194.729240
New scale = 1.005625
==============================
Iteration 2
Current scale = 1.005625
Pressure = -78193.262300
Step reduced to 0.005
New scale = 1.000625
==============================
Iteration 3
Current scale = 1.000625
Pressure = -29276.442010
New scale = 0.9956250000000001
==============================
Iteration 4
Current scale = 0.9956250000000001
Pressure = 22194.729240
Step reduced to 0.0025
New scale = 0.998125
==============================
Iteration 5
Current scale = 0.998125
Pressure = -3528.677666
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 0.998125
==============================
Iteration 1
Current scale = 0.998125
Pressure = 24787.174030
New scale = 1.008125
==============================
Iteration 2
Current scale = 1.008125
Pressure = -75068.880600
Step reduced to 0.005
New scale = 1.003125
==============================
Iteration 3
Current scale = 1.003125
Pressure = -27405.288100
New scale = 0.998125
==============================
Iteration 4
Current scale = 0.998125
Pressure = 24787.174030
Step reduced to 0.0025
New scale = 1.000625
==============================
Iteration 5
Current scale = 1.000625
Pressure = -1444.316044
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.000625
==============================
Iteration 1
Current scale = 1.000625
Pressure = 32148.625917
New scale = 1.010625
==============================
Iteration 2
Current scale = 1.010625
Pressure = -62612.344100
Step reduced to 0.005
New scale = 1.0056250000000002
==============================
Iteration 3
Current scale = 1.0056250000000002
Pressure = -16558.910753
New scale = 1.0006250000000003
==============================
Iteration 4
Current scale = 1.0006250000000003
Pressure = 32148.625917
Step reduced to 0.0025
New scale = 1.0031250000000003
==============================
Iteration 5
Current scale = 1.0031250000000003
Pressure = 7502.666479
New scale = 1.0056250000000002
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6630.58 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6618.2453213600675
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.0056250000000002
==============================
Iteration 1
Current scale = 1.0056250000000002
Pressure = 136911.971000
New scale = 1.0156250000000002
==============================
Iteration 2
Current scale = 1.0156250000000002
Pressure = 44720.284390
New scale = 1.0256250000000002
==============================
Iteration 3
Current scale = 1.0256250000000002
Pressure = -32543.821820
Step reduced to 0.005
New scale = 1.0206250000000003
==============================
Iteration 4
Current scale = 1.0206250000000003
Pressure = 3550.203670
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2859.99 K
Uncertainty = 9746.44 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2859.9890240000004 9759.9975881222163
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3600.0 K
3600, 3600, 1
Adaptive temp step = 100
3600
Start running job (temp, id) 3600 1000 ...
Using closest available scale or default: 1.0206250000000003
==============================
Iteration 1
Current scale = 1.0206250000000003
Pressure = 95811.796100
New scale = 1.0306250000000003
==============================
Iteration 2
Current scale = 1.0306250000000003
Pressure = 22936.976840
New scale = 1.0406250000000004
==============================
Iteration 3
Current scale = 1.0406250000000004
Pressure = -33488.066759
Step reduced to 0.005
New scale = 1.0356250000000005
==============================
Iteration 4
Current scale = 1.0356250000000005
Pressure = -7266.571910
New scale = 1.0306250000000006
==============================
Iteration 5
Current scale = 1.0306250000000006
Pressure = 22936.977040
Step reduced to 0.0025
New scale = 1.0331250000000005
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2891.45 K
Uncertainty = 14255.14 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2891.4451080000003 14310.361694753528
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3200.0000000000000 K
3200, 3200, 1
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1000 ...
Using closest available scale or default: 1.0331250000000005
==============================
Iteration 1
Current scale = 1.0331250000000005
Pressure = -30985.323730
Step reduced to 0.005
New scale = 1.0281250000000006
==============================
Iteration 2
Current scale = 1.0281250000000006
Pressure = 818.750840
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 7 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3200 | 0 | 1 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2889.21 K
Uncertainty = 14387.82 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2889.2136659999996 14395.939021744562
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3200 0 1 1
3600 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 4 MD duplicate(s) at 3200.0000000000000 K
2800, 2800, 4
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1100 ...
Using scale from current temperature folder: 1.0206250000000003
==============================
Iteration 1
Current scale = 1.0206250000000003
Pressure = 21277.908200
New scale = 1.0306250000000003
==============================
Iteration 2
Current scale = 1.0306250000000003
Pressure = -44962.822340
Step reduced to 0.005
New scale = 1.0256250000000005
==============================
Iteration 3
Current scale = 1.0256250000000005
Pressure = -12093.419300
New scale = 1.0206250000000006
==============================
Iteration 4
Current scale = 1.0206250000000006
Pressure = 21277.908100
Step reduced to 0.0025
New scale = 1.0231250000000005
==============================
Iteration 5
Current scale = 1.0231250000000005
Pressure = 804.474400
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2800 1200 ...
Using scale from current temperature folder: 1.0231250000000005
==============================
Iteration 1
Current scale = 1.0231250000000005
Pressure = -4750.428350
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2800 1300 ...
Using scale from current temperature folder: 1.0231250000000005
==============================
Iteration 1
Current scale = 1.0231250000000005
Pressure = -5809.784236
Step reduced to 0.005
New scale = 1.0181250000000006
==============================
Iteration 2
Current scale = 1.0181250000000006
Pressure = 32202.583000
Step reduced to 0.0025
New scale = 1.0206250000000006
==============================
Iteration 3
Current scale = 1.0206250000000006
Pressure = 18646.098300
New scale = 1.0231250000000005
==============================
Iteration 4
Current scale = 1.0231250000000005
Pressure = -5809.781812
Step reduced to 0.00125
New scale = 1.0218750000000005
==============================
Iteration 5
Current scale = 1.0218750000000005
Pressure = 8357.635190
Step reduced to 0.000625
New scale = 1.0225000000000006
Now running full trajectory...
Completed!
==============================
3200, 3200, 4
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1100 ...
Using scale from current temperature folder: 1.0281250000000006
==============================
Iteration 1
Current scale = 1.0281250000000006
Pressure = 5776.605594
New scale = 1.0381250000000006
==============================
Iteration 2
Current scale = 1.0381250000000006
Pressure = -57356.646700
Step reduced to 0.005
New scale = 1.0331250000000007
==============================
Iteration 3
Current scale = 1.0331250000000007
Pressure = -25785.464106
New scale = 1.0281250000000008
==============================
Iteration 4
Current scale = 1.0281250000000008
Pressure = 5776.606030
Step reduced to 0.0025
New scale = 1.0306250000000008
==============================
Iteration 5
Current scale = 1.0306250000000008
Pressure = -13758.813990
Step reduced to 0.00125
New scale = 1.0293750000000008
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1200 ...
Using scale from current temperature folder: 1.0293750000000008
==============================
Iteration 1
Current scale = 1.0293750000000008
Pressure = 8298.685020
New scale = 1.0393750000000008
==============================
Iteration 2
Current scale = 1.0393750000000008
Pressure = -40131.393360
Step reduced to 0.005
New scale = 1.034375000000001
==============================
Iteration 3
Current scale = 1.034375000000001
Pressure = -21261.303604
New scale = 1.029375000000001
==============================
Iteration 4
Current scale = 1.029375000000001
Pressure = 8298.686540
Step reduced to 0.0025
New scale = 1.031875000000001
==============================
Iteration 5
Current scale = 1.031875000000001
Pressure = -8461.527259
Step reduced to 0.00125
New scale = 1.030625000000001
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1300 ...
Using scale from current temperature folder: 1.030625000000001
==============================
Iteration 1
Current scale = 1.030625000000001
Pressure = 15351.253600
New scale = 1.040625000000001
==============================
Iteration 2
Current scale = 1.040625000000001
Pressure = -48260.264010
Step reduced to 0.005
New scale = 1.0356250000000011
==============================
Iteration 3
Current scale = 1.0356250000000011
Pressure = -21836.797740
New scale = 1.0306250000000012
==============================
Iteration 4
Current scale = 1.0306250000000012
Pressure = 15351.251300
Step reduced to 0.0025
New scale = 1.0331250000000012
==============================
Iteration 5
Current scale = 1.0331250000000012
Pressure = 354.480906
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 4 | 0 | 4
3200 | 0 | 4 | 4
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2997.95 K
Uncertainty = 106.43 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2997.8558330436272 106.56737334861582
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 4 0 4
3200 0 4 4
3600 0 1 1
current fit
1 2997.8558330436272 106.56737334861582
possibilities:
current fit
0 2997.8558330436272 106.56737334861582
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ ---
1000/1 -11.094402 0.127664 993.166401 14.488997 2580.242782 0.00000114 up 6.370e-09
1500/1 -11.021352 0.188824 1468.967440 14.623525 2414.394481 0.00000164 up 2.230e-09
2000/1 -10.943286 0.252718 1966.033930 14.807032 -6972.051259 0.00000193 up 4.470e-09
2800/1 -10.836191 0.360898 2807.626950 14.866605 33550.500075 -0.00001407 down 5.080e-08
2800/2 -10.817957 0.367412 2858.302115 14.901636 32872.187958 -0.00005885 down 1.380e-07
2800/3 -10.828048 0.354214 2755.630715 14.876852 33720.988430 -0.00001281 down 6.440e-08
2800/4 -10.832138 0.354088 2754.650685 14.824253 46493.631350 -0.00001836 down 3.260e-08
3200/1 -10.230587 0.405839 3157.245700 16.340850 28730.398710 0.00003249 up 2.970e-05
3200/2 -10.227936 0.408624 3178.915825 16.392909 17740.809844 0.00002749 up 3.860e-05
3200/3 -10.187480 0.408471 3177.722370 16.664033 -981.746110 0.00002955 up 2.970e-05
3200/4 -10.150618 0.408126 3175.035660 16.884727 -21935.135705 0.00002253 up 4.430e-05
3600/1 -10.048790 0.462165 3595.437415 17.329871 -22187.223885 0.00002521 up 7.690e-05
500/1 -11.158226 0.063241 491.985042 14.373375 -28.838959 0.00000034 up 5.910e-09
======================================================================================================================================================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 4 | 0 | 4
3200 | 0 | 4 | 4
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2997.72 K
Uncertainty = 106.68 K
====================================
Wrote /projects/bhin/hqj/sluschi_auto/797e196b-6bb7-4e2a-a1be-cd2d54fadffa/Os2/Dir_lammps/cost_table.out
Collected 70 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 13
Total log files (incl. subruns) = 70
Total wall time = 29:37:34
Total seconds = 106654
Total GPU hours = 29.63
====================================
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 2997.7227566848137
STD_LMP = 106.68127993690163
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -10.82240833
PBE_energy_eV_per_atom = -10.90116435
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -10.18684486
PBE_energy_eV_per_atom = -173310.72870080
DH_LMP_raw_PBE = 0.63556347 eV/atom
DH_LMP_PBE = 0.54904434 eV/atom
DH_PBE = -173299.91405558 eV/atom
Cp_solid_PBE = 1.44198553e-04 eV/atom/K
Cp_liquid_PBE = 3.85413542e-04 eV/atom/K
Cp_avg_PBE = 2.16297830e-04 eV/atom/K
DeltaT_PBE = 400.00 K
DH_raw_PBE = -173299.82753645 eV/atom
MT_PBE = -946198800.40022838 K
Os2 1.0 2.7461339300000001 -0.0000000000000000 0.0000000000000000 -1.3730669700000000 2.3782224400000000 0.0000000000000000 0.0000000000000000 -0.0000000000000000 4.3263142200000004 Os 2 direct 0.3333330000000000 0.6666670000000000 0.2500000000000000 Os 0.6666670000000000 0.3333330000000000 0.7500000000000000 Os
No output files have been received yet.