=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-3.8687179999999999 5.9147399600000004 7.9043203200000001
8.9766551600000000 -2.0843480000000001E-002 5.6434614000000005
4.7178572200000000 8.9033751599999995 -5.6521472999999993
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
10.603 10.603 11.553 85.192 94.808 85.022
In UNIT-cell, number of atoms: 2 1 total: 3
Inverse Matrix is:
-3.9039911374718121E-002 8.0844594528489966E-002 2.6124475533396092E-002
6.0250149284120626E-002 -1.2012963643715509E-002 7.2263117177890315E-002
6.2320554663385611E-002 4.8558064275991027E-002 -4.1287461142468118E-002
In SUPER-cell, number of atoms: 64 32 total: 96
POSCAR_STRCT atoms = 96
Accepted radius = 11 with 96 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps
['Si', 'Mo']
elements: ['Si', 'Mo']
counts: [64, 32]
solid atom IDs: 1:96
liquid atom IDs: 97:192
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -21.159765
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 22658.139700
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = -26540.051400
Step reduced to 0.005
New scale = 1.0050000000000001
==============================
Iteration 3
Current scale = 1.0050000000000001
Pressure = -2727.120897
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0050000000000001
==============================
Iteration 1
Current scale = 1.0050000000000001
Pressure = 50942.411500
New scale = 1.0150000000000001
==============================
Iteration 2
Current scale = 1.0150000000000001
Pressure = -2091.777320
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.0150000000000001
==============================
Iteration 1
Current scale = 1.0150000000000001
Pressure = 83826.143500
New scale = 1.0250000000000001
==============================
Iteration 2
Current scale = 1.0250000000000001
Pressure = 54037.630900
New scale = 1.0350000000000001
==============================
Iteration 3
Current scale = 1.0350000000000001
Pressure = 12078.975750
New scale = 1.0450000000000002
==============================
Iteration 4
Current scale = 1.0450000000000002
Pressure = -21337.919290
Step reduced to 0.005
New scale = 1.0400000000000003
==============================
Iteration 5
Current scale = 1.0400000000000003
Pressure = -4279.010360
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1514.74 K
Uncertainty = 7251.88 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1514.7393730000001 7247.5437192518530
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1750.0000000000000 K
1750, 1750, 1
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1000 ...
Using closest available scale or default: 1.0400000000000003
==============================
Iteration 1
Current scale = 1.0400000000000003
Pressure = -28717.554900
Step reduced to 0.005
New scale = 1.0350000000000004
==============================
Iteration 2
Current scale = 1.0350000000000004
Pressure = -15511.484590
New scale = 1.0300000000000005
==============================
Iteration 3
Current scale = 1.0300000000000005
Pressure = 2661.465678
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1771.86 K
Uncertainty = 6963.73 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1771.8571099999999 7005.6743683813147
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1875.0000000000000 K
1875, 1875, 1
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1000 ...
Using closest available scale or default: 1.0400000000000003
==============================
Iteration 1
Current scale = 1.0400000000000003
Pressure = -11367.810880
Step reduced to 0.005
New scale = 1.0350000000000004
==============================
Iteration 2
Current scale = 1.0350000000000004
Pressure = 1932.051224
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
1875 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1793.55 K
Uncertainty = 6981.27 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1793.5516874999998 6991.6774248075681
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
1875 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1750.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
1750, 1750, 4
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1100 ...
Using scale from current temperature folder: 1.0300000000000005
==============================
Iteration 1
Current scale = 1.0300000000000005
Pressure = 12091.204530
New scale = 1.0400000000000005
==============================
Iteration 2
Current scale = 1.0400000000000005
Pressure = -23604.965300
Step reduced to 0.005
New scale = 1.0350000000000006
==============================
Iteration 3
Current scale = 1.0350000000000006
Pressure = -14421.504260
New scale = 1.0300000000000007
==============================
Iteration 4
Current scale = 1.0300000000000007
Pressure = 1546.657099
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1200 ...
Using scale from current temperature folder: 1.0300000000000007
==============================
Iteration 1
Current scale = 1.0300000000000007
Pressure = 8107.700864
New scale = 1.0400000000000007
==============================
Iteration 2
Current scale = 1.0400000000000007
Pressure = -20826.293300
Step reduced to 0.005
New scale = 1.0350000000000008
==============================
Iteration 3
Current scale = 1.0350000000000008
Pressure = -6543.396010
New scale = 1.030000000000001
==============================
Iteration 4
Current scale = 1.030000000000001
Pressure = 9820.429530
Step reduced to 0.0025
New scale = 1.0325000000000009
==============================
Iteration 5
Current scale = 1.0325000000000009
Pressure = 5081.999105
New scale = 1.0350000000000008
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1300 ...
Using scale from current temperature folder: 1.0350000000000008
==============================
Iteration 1
Current scale = 1.0350000000000008
Pressure = -1531.457230
Converged!
Now running full trajectory...
Completed!
==============================
1875, 1875, 4
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1100 ...
Using scale from current temperature folder: 1.0350000000000004
==============================
Iteration 1
Current scale = 1.0350000000000004
=== DFT corrections begin ===
=== PBE correction ===
N rows with PBE energy = 12
MT_LMP = 1876.9679749595714
STD_LMP = 44.46029541896981
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -7.23539757
PBE_energy_eV_per_atom = -7.26498898
N_solid_PBE = 6
SEM_lammps_solid_PBE = 9.65902204e-03 eV/atom
SEM_PBE_solid = 1.19467330e-02 eV/atom
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -7.15278342
PBE_energy_eV_per_atom = -7.18501383
N_liquid_PBE = 6
SEM_lammps_liquid_PBE = 8.19552697e-03 eV/atom
SEM_PBE_liquid = 7.71496359e-03 eV/atom
DH_LMP_raw_PBE = 0.08261415 eV/atom
DH_LMP_PBE = -0.02010312 eV/atom
DH_PBE = -0.02274212 eV/atom
STD_DH_LMP_PBE = 1.26674137e-02 eV/atom
STD_DH_PBE = 1.42212901e-02 eV/atom
COV_DH_PBE_LMP = 1.72698380e-04 (eV/atom)^2
Cp_solid_PBE = 5.24814583e-04 eV/atom/K
Cp_liquid_PBE = 7.07792708e-04 eV/atom/K
Cp_avg_PBE = 6.16303646e-04 eV/atom/K
DeltaT_PBE = 166.67 K
DH_raw_PBE = 0.07997515 eV/atom
MT_PBE = 2123.36315203 K
STD_PBE = 386.71115518 K
=== R2SCAN correction ===
N rows with R2SCAN energy = 12
MT_LMP = 1876.9679749595714
STD_LMP = 44.46029541896981
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = -7.23539757
R2SCAN_energy_eV_per_atom = -14.47954822
N_solid_R2SCAN = 6
SEM_lammps_solid_R2SCAN = 9.65902204e-03 eV/atom
SEM_R2SCAN_solid = 1.25776058e-02 eV/atom
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = -7.15278342
R2SCAN_energy_eV_per_atom = -14.39454271
N_liquid_R2SCAN = 6
SEM_lammps_liquid_R2SCAN = 8.19552697e-03 eV/atom
SEM_R2SCAN_liquid = 8.97806626e-03 eV/atom
DH_LMP_raw_R2SCAN = 0.08261415 eV/atom
DH_LMP_R2SCAN = -0.02010312 eV/atom
DH_R2SCAN = -0.01771177 eV/atom
STD_DH_LMP_R2SCAN = 1.26674137e-02 eV/atom
STD_DH_R2SCAN = 1.54532146e-02 eV/atom
COV_DH_R2SCAN_LMP = 1.87660833e-04 (eV/atom)^2
Cp_solid_R2SCAN = 5.24814583e-04 eV/atom/K
Cp_liquid_R2SCAN = 7.07792708e-04 eV/atom/K
Cp_avg_R2SCAN = 6.16303646e-04 eV/atom/K
DeltaT_R2SCAN = 166.67 K
DH_raw_R2SCAN = 0.08500551 eV/atom
MT_R2SCAN = 1653.69416323 K
STD_R2SCAN = 535.21895523 K
=== DFT corrections end ===
Pressure = 2333.883131
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1200 ...
Using scale from current temperature folder: 1.0350000000000004
==============================
Iteration 1
Current scale = 1.0350000000000004
Pressure = -1152.609215
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1300 ...
Using scale from current temperature folder: 1.0350000000000004
==============================
Iteration 1
Current scale = 1.0350000000000004
Pressure = -1932.106376
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 3
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 2 | 2 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1879.13 K
Uncertainty = 5981.66 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1879.1342239999999 5979.8331004409920
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 4 0 4
1875 2 2 4
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1750.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 2000.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 2000.0000000000000 K
1750, 1750, 4
Adaptive temp step = 100
1750
1875, 1875, 4
Adaptive temp step = 100
1875
1875, 1875, 4
Adaptive temp step = 100
1875
2000, 2000, 4
Adaptive temp step = 100
2000
Start running job (temp, id) 2000 1100 ...
Using scale from current temperature folder: 1.0400000000000003
==============================
Iteration 1
Current scale = 1.0400000000000003
Pressure = 4203.115960
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1200 ...
Using scale from current temperature folder: 1.0400000000000003
==============================
Iteration 1
Current scale = 1.0400000000000003
Pressure = -2077.552230
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1300 ...
Using scale from current temperature folder: 1.0400000000000003
==============================
Iteration 1
Current scale = 1.0400000000000003
Pressure = -1752.342652
Converged!
Now running full trajectory...
Completed!
==============================
1875, 1875, 4
Adaptive temp step = 100
1875
2000, 2000, 4
Adaptive temp step = 100
2000
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 6
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 2 | 2 | 4
2000 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1876.71 K
Uncertainty = 44.16 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1876.6910681219924 44.156164638815959
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 4 0 4
1875 2 2 4
2000 0 4 4
current fit
1 1876.6910681219924 44.156164638815959
possibilities:
current fit
0 1876.6910681219924 44.156164638815959
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ------
1000/1 -7.582511 0.130312 1013.413856 13.985051 -1244.767129 -0.00000050 down 6.980e-10 P1 (1)
1500/1 -7.475218 0.192563 1497.529400 14.241901 -808.986110 0.00000020 up 2.740e-07 P1 (1)
1750/1 -7.241539 0.229608 1785.626245 15.074137 -1249.714992 -0.00000151 down 1.480e-06 P1 (1)
1750/2 -7.283992 0.227115 1766.234920 14.866913 1262.433481 -0.00000875 down 1.880e-06 P1 (1)
1750/3 -7.252155 0.225127 1750.779650 14.972937 1130.494706 -0.00000654 down 6.710e-07 P1 (1)
1750/4 -7.229132 0.222771 1732.451735 15.035788 2123.766668 -0.00000699 down 2.350e-06 P1 (1)
1875/1 -7.192908 0.243394 1892.837780 15.195243 3663.573660 -0.00000481 down 3.850e-06 P1 (1)
1875/2 -7.195724 0.243437 1893.167780 15.183733 4321.295212 -0.00000210 down 1.370e-06 P1 (1)
1875/3 -7.229062 0.244603 1902.242310 15.033325 5136.597241 -0.00000539 down 5.400e-06 P1 (1)
1875/4 -7.192021 0.238421 1854.163990 15.164706 6756.161131 -0.00000027 down 2.760e-06 P1 (1)
2000/1 -7.110840 0.261267 2031.835640 15.662105 -2788.633370 -0.00000396 down 8.170e-06 P1 (1)
2000/2 -7.110457 0.253984 1975.192200 15.543812 104.224877 -0.00000199 down 6.180e-06 P1 (1)
2000/3 -7.153928 0.257637 2003.599015 15.328928 2216.141864 -0.00000177 down 4.980e-06 P1 (1)
2000/4 -7.130129 0.259546 2018.448730 15.449234 2315.050943 -0.00000285 down 8.210e-06 P1 (1)
500/1 -7.650467 0.064828 504.157693 13.784135 55.168099 -0.00000018 down 1.020e-09 P1 (1)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 6
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 2 | 2 | 4
2000 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1876.97 K
Uncertainty = 44.46 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/6b37704e-f914-4ec9-b696-77c93d09557b/Si2Mo/Dir_lammps/cost_table.out
Collected 47 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 15
Total log files (incl. subruns) = 47
Total wall time = 1:40:16
Total seconds = 6016
Total GPU hours = 1.67
====================================
Si2 Mo1 1.0 2.9982396200000001 -0.0000000000000000 -1.1304294600000000 -0.4262073400000000 2.9677917200000001 -1.1304294600000000 -0.0090318500000000 -0.0104217400000000 4.5173748900000001 Si Mo 2 1 direct 0.6645696300000000 0.6645696300000000 0.3291412600000000 Si 0.3354303700000000 0.3354303700000000 0.6708587400000000 Si -0.0000000000000000 -0.0000000000000000 -0.0000000000000000 Mo
No output files have been received yet.