=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-4.8100473000000008 -5.4419509100000001 8.3312548900000003
-2.8860283000000000 -8.1629263099999996 -8.3312457100000010
9.6200944800000006 -5.4419509200000000 3.3324970600000001
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.053 12.015 11.544 94.592 85.007 94.797
In UNIT-cell, number of atoms: 1 1 total: 2
Inverse Matrix is:
-4.7792648927317445E-002 -1.7922283197798851E-002 7.4676073405658142E-002
-4.6467423452098089E-002 -6.3364719474582568E-002 -4.2243127568423591E-002
6.2084483977036045E-002 -5.1737070633786242E-002 1.5521121422232591E-002
In SUPER-cell, number of atoms: 58 58 total: 116
POSCAR_STRCT atoms = 116
Accepted radius = 11 with 116 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps
['C', 'Zr']
elements: ['C', 'Zr']
counts: [58, 58]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -6828.683230
Step reduced to 0.005
New scale = 0.995
==============================
Iteration 2
Current scale = 0.995
Pressure = 21773.413100
Step reduced to 0.0025
New scale = 0.9974999999999999
==============================
Iteration 3
Current scale = 0.9974999999999999
Pressure = 7193.250450
New scale = 0.9999999999999999
==============================
Iteration 4
Current scale = 0.9999999999999999
Pressure = -6828.685710
Step reduced to 0.00125
New scale = 0.9987499999999999
==============================
Iteration 5
Current scale = 0.9987499999999999
Pressure = 89.172697
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 0.9987499999999999
==============================
Iteration 1
Current scale = 0.9987499999999999
Pressure = 18695.027260
New scale = 1.0087499999999998
==============================
Iteration 2
Current scale = 1.0087499999999998
Pressure = -37421.474600
Step reduced to 0.005
New scale = 1.00375
==============================
Iteration 3
Current scale = 1.00375
Pressure = -10452.896460
New scale = 0.9987499999999999
==============================
Iteration 4
Current scale = 0.9987499999999999
Pressure = 18695.031090
Step reduced to 0.0025
New scale = 1.00125
==============================
Iteration 5
Current scale = 1.00125
Pressure = 3900.428160
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.00125
==============================
Iteration 1
Current scale = 1.00125
Pressure = 27834.485210
New scale = 1.01125
==============================
Iteration 2
Current scale = 1.01125
Pressure = -25709.048700
Step reduced to 0.005
New scale = 1.00625
==============================
Iteration 3
Current scale = 1.00625
Pressure = -103.855099
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.00625
==============================
Iteration 1
Current scale = 1.00625
Pressure = 25290.553800
New scale = 1.01625
==============================
Iteration 2
Current scale = 1.01625
Pressure = -23417.285330
Step reduced to 0.005
New scale = 1.0112500000000002
==============================
Iteration 3
Current scale = 1.0112500000000002
Pressure = -1173.090871
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6608.84 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6625.3599712041960
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.0112500000000002
==============================
Iteration 1
Current scale = 1.0112500000000002
Pressure = 31804.826400
New scale = 1.0212500000000002
==============================
Iteration 2
Current scale = 1.0212500000000002
Pressure = -15582.484840
Step reduced to 0.005
New scale = 1.0162500000000003
==============================
Iteration 3
Current scale = 1.0162500000000003
Pressure = 8222.022950
Step reduced to 0.0025
New scale = 1.0187500000000003
==============================
Iteration 4
Current scale = 1.0187500000000003
Pressure = -3197.746496
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2859.99 K
Uncertainty = 9707.79 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2859.9890240000004 9719.3107691344376
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3600.0 K
3600, 3600, 1
Adaptive temp step = 100
3600
Start running job (temp, id) 3600 1000 ...
Using closest available scale or default: 1.0187500000000003
==============================
Iteration 1
Current scale = 1.0187500000000003
Pressure = 29392.663800
New scale = 1.0287500000000003
==============================
Iteration 2
Current scale = 1.0287500000000003
Pressure = -17113.546360
Step reduced to 0.005
New scale = 1.0237500000000004
==============================
Iteration 3
Current scale = 1.0237500000000004
Pressure = 2907.148890
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 6
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 3687.32 K
Uncertainty = 12749.78 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 3687.3237335999997 12771.782338794448
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 4400.0 K
4400, 4400, 1
Adaptive temp step = 100
4400
Start running job (temp, id) 4400 1000 ...
Using closest available scale or default: 1.0237500000000004
==============================
Iteration 1
Current scale = 1.0237500000000004
Pressure = 35435.534400
New scale = 1.0337500000000004
==============================
Iteration 2
Current scale = 1.0337500000000004
Pressure = -3187.797733
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 7 folders
Wrote phase_pred.csv
Label counts:
solid = 6
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 1 | 0 | 1
4400 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 3690.31 K
Uncertainty = 17746.66 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 3690.3093469999999 17696.163890316297
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 1 0 1
4400 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 4000.0000000000000 K
4000, 4000, 1
Adaptive temp step = 100
4000
Start running job (temp, id) 4000 1000 ...
Using closest available scale or default: 1.0337500000000004
==============================
Iteration 1
Current scale = 1.0337500000000004
Pressure = -16848.815590
Step reduced to 0.005
New scale = 1.0287500000000005
==============================
Iteration 2
Current scale = 1.0287500000000005
Pressure = -939.816905
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 8 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 1 | 0 | 1
4000 | 1 | 0 | 1
4400 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 4146.51 K
Uncertainty = 16699.43 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 4146.5076458124995 16696.080946120921
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 1 0 1
4000 1 0 1
4400 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 4000.0000000000000 K
next job: 4 MD duplicate(s) at 4400.0000000000000 K
4000, 4000, 4
Adaptive temp step = 100
4000
Start running job (temp, id) 4000 1100 ...
Using scale from current temperature folder: 1.0287500000000005
==============================
Iteration 1
Current scale = 1.0287500000000005
Pressure = -2616.575000
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 4000 1200 ...
Using scale from current temperature folder: 1.0287500000000005
==============================
Iteration 1
Current scale = 1.0287500000000005
Pressure = 5008.533746
New scale = 1.0387500000000005
==============================
Iteration 2
Current scale = 1.0387500000000005
Pressure = -27426.363120
Step reduced to 0.005
New scale = 1.0337500000000006
==============================
Iteration 3
Current scale = 1.0337500000000006
Pressure = -11458.938444
New scale = 1.0287500000000007
==============================
Iteration 4
Current scale = 1.0287500000000007
Pressure = 5000.095287
Step reduced to 0.0025
New scale = 1.0312500000000007
==============================
Iteration 5
Current scale = 1.0312500000000007
Pressure = 1942.277910
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 4000 1300 ...
Using scale from current temperature folder: 1.0312500000000007
==============================
Iteration 1
Current scale = 1.0312500000000007
Pressure = -2527.130010
Converged!
Now running full trajectory...
Completed!
==============================
4400, 4400, 4
Adaptive temp step = 100
4400
Start running job (temp, id) 4400 1100 ...
Using scale from current temperature folder: 1.0337500000000004
==============================
Iteration 1
Current scale = 1.0337500000000004
Pressure = -3210.241900
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 4400 1200 ...
Using scale from current temperature folder: 1.0337500000000004
==============================
Iteration 1
Current scale = 1.0337500000000004
Pressure = 10958.122580
New scale = 1.0437500000000004
==============================
Iteration 2
Current scale = 1.0437500000000004
Pressure = -24586.631410
Step reduced to 0.005
New scale = 1.0387500000000005
==============================
Iteration 3
Current scale = 1.0387500000000005
Pressure = -6815.620712
New scale = 1.0337500000000006
==============================
Iteration 4
Current scale = 1.0337500000000006
Pressure = 10683.766550
Step reduced to 0.0025
New scale = 1.0362500000000006
==============================
Iteration 5
Current scale = 1.0362500000000006
Pressure = 1662.794044
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 4400 1300 ...
Using scale from current temperature folder: 1.0362500000000006
==============================
Iteration 1
Current scale = 1.0362500000000006
Pressure = 10739.472400
New scale = 1.0462500000000006
==============================
Iteration 2
Current scale = 1.0462500000000006
Pressure = -23132.477075
Step reduced to 0.005
New scale = 1.0412500000000007
==============================
Iteration 3
Current scale = 1.0412500000000007
Pressure = -8490.549410
New scale = 1.0362500000000008
==============================
Iteration 4
Current scale = 1.0362500000000008
Pressure = 10243.078400
Step reduced to 0.0025
New scale = 1.0387500000000007
==============================
Iteration 5
Current scale = 1.0387500000000007
Pressure = 3095.871400
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 14 folders
Wrote phase_pred.csv
Label counts:
solid = 10
liquid = 4
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 1 | 0 | 1
4000 | 4 | 0 | 4
4400 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 4199.51 K
Uncertainty = 106.52 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 4199.0211726087782 106.84989607344703
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 1 0 1
4000 4 0 4
4400 0 4 4
current fit
1 4199.0211726087782 106.84989607344703
possibilities:
current fit
0 4199.0211726087782 106.84989607344703
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ------
1000/1 -9.566014 0.128007 994.591080 13.457379 2006.114494 -0.00000055 down 1.000e-08 P1 (1)
1500/1 -9.497989 0.194052 1507.752755 13.632047 313.090555 -0.00000006 down 5.540e-10 P1 (1)
2000/1 -9.422224 0.256013 1989.179735 13.808054 527.448551 0.00000016 up 1.280e-08 P1 (1)
2800/1 -9.294027 0.358482 2785.339420 14.132826 330.956371 -0.00000010 down 7.160e-08 P1 (1)
3600/1 -9.080712 0.457642 3555.802535 14.782987 -5255.819742 0.00001154 up 1.220e-07 P1 (1)
4000/1 -8.882871 0.512943 3985.481665 15.243035 12265.343647 0.00002657 up 2.310e-07 P1 (1)
4000/2 -8.921054 0.505970 3931.301355 15.271931 1914.004460 0.00001642 up 5.830e-07 P1 (1)
4000/3 -8.927630 0.510233 3964.424740 15.146489 6919.546231 0.00001688 up 4.360e-09 P1 (1)
4000/4 -8.898941 0.509992 3962.547220 15.064597 21449.505870 0.00003040 up 8.540e-07 P1 (1)
4400/1 -8.508857 0.541324 4205.996115 15.745231 44119.035200 0.00008604 up 2.130e-05 P1 (1)
4400/2 -8.584375 0.548722 4263.473830 15.842702 30070.803750 0.00005599 up 6.360e-06 P1 (1)
4400/3 -8.484170 0.550782 4279.482180 16.134174 30743.979450 0.00005903 up 1.900e-05 P1 (1)
4400/4 -8.536175 0.548990 4265.555350 16.001615 28497.333520 0.00006298 up 1.420e-05 P1 (1)
500/1 -9.633420 0.064713 502.811983 13.314677 154.501856 -0.00000008 down 4.380e-09 P1 (1)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/summary.out
Collected 14 folders
Wrote phase_pred.csv
Label counts:
solid = 10
liquid = 4
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 1 | 0 | 1
4000 | 4 | 0 | 4
4400 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 4198.75 K
Uncertainty = 106.79 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/66082cf5-897d-4bb7-a092-2fb712576d00/CZr/Dir_lammps/cost_table.out
Collected 59 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 14
Total log files (incl. subruns) = 59
Total wall time = 9:45:34
Total seconds = 35134
Total GPU hours = 9.76
====================================
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 4198.754131769076
STD_LMP = 106.79311560109278
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -8.89004418
PBE_energy_eV_per_atom = -8.98928503
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -8.43446358
PBE_energy_eV_per_atom = -8.57811543
DH_LMP_raw_PBE = 0.45558060 eV/atom
DH_LMP_PBE = 0.37414599 eV/atom
DH_PBE = 0.32973498 eV/atom
Cp_solid_PBE = 2.03586546e-04 eV/atom/K
Cp_liquid_PBE = 2.03586546e-04 eV/atom/K
Cp_avg_PBE = 2.03586546e-04 eV/atom/K
DeltaT_PBE = 400.00 K
DH_raw_PBE = 0.41116959 eV/atom
MT_PBE = 3700.36334987 K
Zr1 C1 1.0 2.8860283400000002 -0.0000000100000000 1.6662485300000001 0.9620094400000000 2.7209754400000001 1.6662485300000001 -0.0000000200000000 -0.0000000100000000 3.3325001200000002 C Zr 1 1 direct 0.5000000000000000 0.5000000000000000 0.5000000000000000 C -0.0000000000000000 0.0000000000000000 0.0000000000000000 Zr
No output files have been received yet.