=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-6.4658739999999995 6.7195320000000009 6.4008880000000001
-9.0522209999999994 -2.2398440000000002 -6.4008869999999991
-2.5863469999999991 -8.9593760000000007 6.4008909999999997
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.311 11.311 11.311 88.877 91.124 88.877
In UNIT-cell, number of atoms: 1 total: 1
Inverse Matrix is:
-4.9569919158793892E-002 -6.9397902930300709E-002 -1.9827963636520247E-002
5.1514577192745103E-002 -1.7171552661051890E-002 -6.8686094978973752E-002
5.2076102349538349E-002 -5.2076102349538349E-002 5.2076102349538349E-002
In SUPER-cell, number of atoms: 91 total: 91
POSCAR_STRCT atoms = 91
Accepted radius = 11 with 91 atoms
====================================================================================================
/projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps
['Mo']
elements: ['Mo']
counts: [91]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -13533.684660
Step reduced to 0.005
New scale = 0.995
==============================
Iteration 2
Current scale = 0.995
Pressure = 19196.906010
Step reduced to 0.0025
New scale = 0.9974999999999999
==============================
Iteration 3
Current scale = 0.9974999999999999
Pressure = 2684.675120
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 0.9974999999999999
==============================
Iteration 1
Current scale = 0.9974999999999999
Pressure = 31189.526900
New scale = 1.0074999999999998
==============================
Iteration 2
Current scale = 1.0074999999999998
Pressure = -35208.905500
Step reduced to 0.005
New scale = 1.0025
==============================
Iteration 3
Current scale = 1.0025
Pressure = -2073.970013
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0025
==============================
Iteration 1
Current scale = 1.0025
Pressure = 39974.522200
New scale = 1.0125
==============================
Iteration 2
Current scale = 1.0125
Pressure = -22946.626420
Step reduced to 0.005
New scale = 1.0075
==============================
Iteration 3
Current scale = 1.0075
Pressure = 7661.206980
Step reduced to 0.0025
New scale = 1.01
==============================
Iteration 4
Current scale = 1.01
Pressure = -7903.843380
Step reduced to 0.00125
New scale = 1.00875
==============================
Iteration 5
Current scale = 1.00875
Pressure = -204.507352
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.00875
==============================
Iteration 1
Current scale = 1.00875
Pressure = 44992.036700
New scale = 1.01875
==============================
Iteration 2
Current scale = 1.01875
Pressure = -5577.594510
Step reduced to 0.005
New scale = 1.0137500000000002
==============================
Iteration 3
Current scale = 1.0137500000000002
Pressure = 18247.991170
Step reduced to 0.0025
New scale = 1.01625
==============================
Iteration 4
Current scale = 1.01625
Pressure = 4971.264390
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6624.00 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6617.4946550135719
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.01625
==============================
Iteration 1
Current scale = 1.01625
Pressure = 60217.410100
New scale = 1.02625
==============================
Iteration 2
Current scale = 1.02625
Pressure = 11788.254910
New scale = 1.0362500000000001
==============================
Iteration 3
Current scale = 1.0362500000000001
Pressure = -30722.636930
Step reduced to 0.005
New scale = 1.0312500000000002
==============================
Iteration 4
Current scale = 1.0312500000000002
Pressure = -12885.176770
New scale = 1.0262500000000003
==============================
Iteration 5
Current scale = 1.0262500000000003
Pressure = 11788.254890
Step reduced to 0.0025
New scale = 1.0287500000000003
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2050.41 K
Uncertainty = 10816.44 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2050.4090095999995 10794.463883429211
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2400.0000000000000 K
2400, 2400, 1
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1000 ...
Using closest available scale or default: 1.01625
==============================
Iteration 1
Current scale = 1.01625
Pressure = 36656.215600
New scale = 1.02625
==============================
Iteration 2
Current scale = 1.02625
Pressure = -9892.888140
Step reduced to 0.005
New scale = 1.0212500000000002
==============================
Iteration 3
Current scale = 1.0212500000000002
Pressure = 10823.354690
Step reduced to 0.0025
New scale = 1.0237500000000002
==============================
Iteration 4
Current scale = 1.0237500000000002
Pressure = 1943.211060
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 1 | 0 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2452.14 K
Uncertainty = 10429.18 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2452.1437833000000 10410.608641865050
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 1 0 1
2800 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2400.0000000000000 K
next job: 4 MD duplicate(s) at 2800.0000000000000 K
2400, 2400, 4
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1100 ...
Using scale from current temperature folder: 1.0237500000000002
==============================
Iteration 1
Current scale = 1.0237500000000002
Pressure = 7345.477980
New scale = 1.0337500000000002
==============================
Iteration 2
Current scale = 1.0337500000000002
Pressure = -38221.374900
Step reduced to 0.005
New scale = 1.0287500000000003
==============================
Iteration 3
Current scale = 1.0287500000000003
Pressure = -19065.280066
New scale = 1.0237500000000004
==============================
Iteration 4
Current scale = 1.0237500000000004
Pressure = 7345.478020
Step reduced to 0.0025
New scale = 1.0262500000000003
==============================
Iteration 5
Current scale = 1.0262500000000003
Pressure = -8810.580280
Step reduced to 0.00125
New scale = 1.0250000000000004
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1200 ...
Using scale from current temperature folder: 1.0250000000000004
==============================
Iteration 1
Current scale = 1.0250000000000004
Pressure = -856.033229
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1300 ...
Using scale from current temperature folder: 1.0250000000000004
==============================
Iteration 1
Current scale = 1.0250000000000004
Pressure = 37.152410
Converged!
Now running full trajectory...
Completed!
==============================
2800, 2800, 4
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1100 ...
Using scale from current temperature folder: 1.0287500000000003
==============================
Iteration 1
Current scale = 1.0287500000000003
Pressure = 2742.766839
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2800 1200 ...
Using scale from current temperature folder: 1.0287500000000003
==============================
Iteration 1
Current scale = 1.0287500000000003
Pressure = 4187.384070
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2800 1300 ...
Using scale from current temperature folder: 1.0287500000000003
==============================
Iteration 1
Current scale = 1.0287500000000003
Pressure = -282.762920
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 3
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 4 | 0 | 4
2800 | 1 | 3 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2779.36 K
Uncertainty = 9218.26 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2779.3590520720004 9221.1281424866102
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 4 0 4
2800 1 3 4
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2400.0000000000000 K
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 1 MD duplicate(s) at 3200.0000000000000 K
2400, 2400, 4
Adaptive temp step = 100
2400
2800, 2800, 4
Adaptive temp step = 100
2800
3200, 3200, 1
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1000 ...
Using closest available scale or default: 1.0287500000000003
==============================
Iteration 1
Current scale = 1.0287500000000003
Pressure = 31656.933700
New scale = 1.0387500000000003
==============================
Iteration 2
Current scale = 1.0387500000000003
Pressure = -13646.372980
Step reduced to 0.005
New scale = 1.0337500000000004
==============================
Iteration 3
Current scale = 1.0337500000000004
Pressure = 9257.539512
Step reduced to 0.0025
New scale = 1.0362500000000003
==============================
Iteration 4
Current scale = 1.0362500000000003
Pressure = -2790.773690
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 4
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 4 | 0 | 4
2800 | 1 | 3 | 4
3200 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2785.08 K
Uncertainty = 9030.17 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2785.0791247617026 9008.1938775576218
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 4 0 4
2800 1 3 4
3200 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2400.0000000000000 K
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 4 MD duplicate(s) at 3200.0000000000000 K
next job: 4 MD duplicate(s) at 2800.0000000000000 K
next job: 4 MD duplicate(s) at 3200.0000000000000 K
2400, 2400, 4
Adaptive temp step = 100
2400
2800, 2800, 4
Adaptive temp step = 100
2800
2800, 2800, 4
Adaptive temp step = 100
2800
3200, 3200, 4
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1100 ...
Using scale from current temperature folder: 1.0362500000000003
==============================
Iteration 1
Current scale = 1.0362500000000003
Pressure = -6542.064048
Step reduced to 0.005
New scale = 1.0312500000000004
==============================
Iteration 2
Current scale = 1.0312500000000004
Pressure = 16913.943810
Step reduced to 0.0025
New scale = 1.0337500000000004
==============================
Iteration 3
Current scale = 1.0337500000000004
Pressure = 8578.023500
New scale = 1.0362500000000003
==============================
Iteration 4
Current scale = 1.0362500000000003
Pressure = -6542.064869
Step reduced to 0.00125
New scale = 1.0350000000000004
==============================
Iteration 5
Current scale = 1.0350000000000004
Pressure = 1965.929463
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1200 ...
Using scale from current temperature folder: 1.0350000000000004
==============================
Iteration 1
Current scale = 1.0350000000000004
Pressure = -8243.535580
Step reduced to 0.005
New scale = 1.0300000000000005
==============================
Iteration 2
Current scale = 1.0300000000000005
Pressure = 15901.988900
Step reduced to 0.0025
New scale = 1.0325000000000004
==============================
Iteration 3
Current scale = 1.0325000000000004
Pressure = 4379.495311
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1300 ...
Using scale from current temperature folder: 1.0325000000000004
==============================
Iteration 1
Current scale = 1.0325000000000004
Pressure = 6189.954310
New scale = 1.0425000000000004
==============================
Iteration 2
Current scale = 1.0425000000000004
Pressure = -32993.093810
Step reduced to 0.005
New scale = 1.0375000000000005
==============================
Iteration 3
Current scale = 1.0375000000000005
Pressure = -13257.649450
New scale = 1.0325000000000006
==============================
Iteration 4
Current scale = 1.0325000000000006
Pressure = 6190.087010
Step reduced to 0.0025
New scale = 1.0350000000000006
==============================
Iteration 5
Current scale = 1.0350000000000006
Pressure = -1870.650970
Converged!
Now running full trajectory...
Completed!
==============================
2800, 2800, 4
Adaptive temp step = 100
2800
3200, 3200, 4
Adaptive temp step = 100
3200
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 16 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 7
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 4 | 0 | 4
2800 | 1 | 3 | 4
3200 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2719.70 K
Uncertainty = 109.80 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2720.0076106238921 109.96046473753819
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 4 0 4
2800 1 3 4
3200 0 4 4
current fit
1 2720.0076106238921 109.96046473753819
possibilities:
current fit
0 2720.0076106238921 109.96046473753819
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ ---
1000/1 -10.709632 0.130006 1011.326224 16.081482 -1549.917359 -0.00000034 down 6.040e-09
1500/1 -10.624368 0.192235 1495.411320 16.360631 -6897.741337 0.00000127 up 1.890e-08
2000/1 -10.532738 0.253250 1970.048235 16.572522 -201.551015 0.00000202 up 1.970e-08
2400/1 -10.467379 0.308732 2401.649920 16.654143 16424.074810 -0.00000594 down 1.990e-08
2400/2 -10.465934 0.306996 2388.147120 16.592722 25789.365005 -0.00001077 down 4.730e-08
2400/3 -10.466879 0.308001 2395.967635 16.586077 26042.755350 -0.00001586 down 1.220e-08
2400/4 -10.463040 0.304270 2366.937845 16.622020 23021.043150 -0.00000940 down 5.690e-08
2800/1 -10.012420 0.355885 2768.454190 17.982002 -1738.125923 0.00002230 up 4.060e-05
2800/2 -9.970776 0.356782 2775.435960 18.273069 -17099.975987 0.00001307 up 4.870e-05
2800/3 -10.003310 0.362156 2817.237415 18.125197 -14123.697120 0.00001638 up 5.590e-05
2800/4 -10.362956 0.363451 2827.314075 16.951153 12514.861010 -0.00001386 down 5.150e-08
3200/1 -9.906312 0.415630 3233.216475 18.501817 -14558.513516 0.00000909 up 7.400e-05
3200/2 -9.895924 0.412210 3206.616365 18.583551 -18378.540565 0.00000864 up 8.340e-05
3200/3 -9.903612 0.409862 3188.346565 18.595550 -23298.088300 0.00001203 up 5.420e-05
3200/4 -9.883395 0.409713 3187.191755 18.536427 -10781.059565 0.00001445 up 5.740e-05
500/1 -10.777552 0.063965 497.591072 15.857527 91.624061 0.00000037 up 2.550e-09
======================================================================================================================================================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/summary.out
Collected 16 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 7
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 4 | 0 | 4
2800 | 1 | 3 | 4
3200 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2719.95 K
Uncertainty = 110.30 K
====================================
Wrote /projects/bhin/hqj/sluschi_auto/5b2d9c69-b5dc-4628-b0da-09e4a7b09bbd/Mo/Dir_lammps/cost_table.out
Collected 67 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 16
Total log files (incl. subruns) = 67
Total wall time = 31:35:53
Total seconds = 113753
Total GPU hours = 31.60
====================================
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 2719.954114800177
STD_LMP = 110.30216691094085
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -10.44213681
PBE_energy_eV_per_atom = -10.58948554
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -9.98491081
PBE_energy_eV_per_atom = -10.14737734
DH_LMP_raw_PBE = 0.45722601 eV/atom
DH_LMP_PBE = 0.39682792 eV/atom
DH_PBE = 0.38171011 eV/atom
Cp_solid_PBE = 1.71762892e-04 eV/atom/K
Cp_liquid_PBE = 2.05725160e-04 eV/atom/K
Cp_avg_PBE = 1.88744026e-04 eV/atom/K
DeltaT_PBE = 320.00 K
DH_raw_PBE = 0.44210820 eV/atom
MT_PBE = 2616.33301715 K
Mo1 1.0 2.5863489999999998 0.0000000000000000 -0.9144130000000000 -1.2931750000000000 2.2398440000000002 -0.9144130000000000 0.0000000000000000 0.0000000000000000 2.7432379999999998 Mo 1 direct 0.0000000000000000 0.0000000000000000 0.0000000000000000 Mo
No output files have been received yet.