=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
6.7356940500000002 2.3333119199999999 8.7520377800000002
-2.6942812199999997 -9.3332476799999995 4.3760188900000001
8.0828296599999998 -4.6666238399999997 -4.3760188900000001
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.288 10.654 10.308 88.629 87.411 90.775
In UNIT-cell, number of atoms: 2 2 total: 4
Inverse Matrix is:
4.9487607416037659E-002 -2.4743803708018829E-002 7.4231411124056484E-002
1.9047772642775098E-002 -8.0953113266178836E-002 -4.2857567980628640E-002
7.1094553961377219E-002 4.0625459406501280E-002 -4.5703641832313943E-002
In SUPER-cell, number of atoms: 90 90 total: 180
POSCAR_STRCT atoms = 180
Accepted radius = 11 with 180 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps
['Be', 'O']
elements: ['Be', 'O']
counts: [90, 90]
solid atom IDs: 1:180
liquid atom IDs: 181:360
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 24311.310000
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = -28946.518500
Step reduced to 0.005
New scale = 1.0050000000000001
==============================
Iteration 3
Current scale = 1.0050000000000001
Pressure = -3513.142758
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.0050000000000001
==============================
Iteration 1
Current scale = 1.0050000000000001
Pressure = 30400.228100
New scale = 1.0150000000000001
==============================
Iteration 2
Current scale = 1.0150000000000001
Pressure = -24218.585600
Step reduced to 0.005
New scale = 1.0100000000000002
==============================
Iteration 3
Current scale = 1.0100000000000002
Pressure = 1111.520581
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.0100000000000002
==============================
Iteration 1
Current scale = 1.0100000000000002
Pressure = 85270.227800
New scale = 1.0200000000000002
==============================
Iteration 2
Current scale = 1.0200000000000002
Pressure = 49693.336700
New scale = 1.0300000000000002
==============================
Iteration 3
Current scale = 1.0300000000000002
Pressure = 17364.650300
New scale = 1.0400000000000003
==============================
Iteration 4
Current scale = 1.0400000000000003
Pressure = 10749.863940
New scale = 1.0500000000000003
==============================
Iteration 5
Current scale = 1.0500000000000003
Pressure = -47357.808200
Step reduced to 0.005
New scale = 1.0450000000000004
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.0450000000000004
==============================
Iteration 1
Current scale = 1.0450000000000004
Pressure = 40355.845400
New scale = 1.0550000000000004
==============================
Iteration 2
Current scale = 1.0550000000000004
Pressure = 4094.347851
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6636.22 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6628.9115764654989
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.0550000000000004
==============================
Iteration 1
Current scale = 1.0550000000000004
Pressure = 62210.594200
New scale = 1.0650000000000004
==============================
Iteration 2
Current scale = 1.0650000000000004
Pressure = 32722.930900
New scale = 1.0750000000000004
==============================
Iteration 3
Current scale = 1.0750000000000004
Pressure = 15741.260310
New scale = 1.0850000000000004
==============================
Iteration 4
Current scale = 1.0850000000000004
Pressure = 7202.521040
New scale = 1.0950000000000004
==============================
Iteration 5
Current scale = 1.0950000000000004
Pressure = -13438.994440
Step reduced to 0.005
New scale = 1.0900000000000005
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2050.41 K
Uncertainty = 10804.43 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2050.4090095999995 10803.101220450311
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2400.0000000000000 K
2400, 2400, 1
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1000 ...
Using closest available scale or default: 1.0550000000000004
==============================
Iteration 1
Current scale = 1.0550000000000004
Pressure = 23184.793600
New scale = 1.0650000000000004
==============================
Iteration 2
Current scale = 1.0650000000000004
Pressure = 12045.755400
New scale = 1.0750000000000004
==============================
Iteration 3
Current scale = 1.0750000000000004
Pressure = 10527.169090
New scale = 1.0850000000000004
==============================
Iteration 4
Current scale = 1.0850000000000004
Pressure = -7329.737030
Step reduced to 0.005
New scale = 1.0800000000000005
==============================
Iteration 5
Current scale = 1.0800000000000005
Pressure = -5654.714150
New scale = 1.0750000000000006
Now running full trajectory...
=== DFT corrections begin ===
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 2197.4239823751664
STD_LMP = 107.8667490695961
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -6.76243979
PBE_energy_eV_per_atom = -6.77077193
N_solid_PBE = 4
SEM_lammps_solid_PBE = 1.18946947e-02 eV/atom
SEM_PBE_solid = 1.19202921e-02 eV/atom
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -6.53020222
PBE_energy_eV_per_atom = -6.53678537
N_liquid_PBE = 4
SEM_lammps_liquid_PBE = 5.53780437e-03 eV/atom
SEM_PBE_liquid = 6.46954916e-03 eV/atom
DH_LMP_raw_PBE = 0.23223757 eV/atom
DH_LMP_PBE = 0.23223757 eV/atom
DH_PBE = 0.23398656 eV/atom
STD_DH_LMP_PBE = 1.31206341e-02 eV/atom
STD_DH_PBE = 1.35627589e-02 eV/atom
COV_DH_PBE_LMP = 1.77442266e-04 (eV/atom)^2
DH_raw_PBE = 0.23398656 eV/atom
MT_PBE = 2213.97288591 K
STD_PBE = 109.14970166 K
=== R2SCAN correction ===
N rows with R2SCAN energy = 8
MT_LMP = 2197.4239823751664
STD_LMP = 107.8667490695961
SOLID (R2SCAN present only):
lammps_poteng_eV_per_atom = -6.76243979
R2SCAN_energy_eV_per_atom = -7.79133493
N_solid_R2SCAN = 4
SEM_lammps_solid_R2SCAN = 1.18946947e-02 eV/atom
SEM_R2SCAN_solid = 1.31879377e-02 eV/atom
LIQUID (R2SCAN present only):
lammps_poteng_eV_per_atom = -6.53020222
R2SCAN_energy_eV_per_atom = -7.53387201
N_liquid_R2SCAN = 4
SEM_lammps_liquid_R2SCAN = 5.53780437e-03 eV/atom
SEM_R2SCAN_liquid = 6.44816645e-03 eV/atom
DH_LMP_raw_R2SCAN = 0.23223757 eV/atom
DH_LMP_R2SCAN = 0.23223757 eV/atom
DH_R2SCAN = 0.25746292 eV/atom
STD_DH_LMP_R2SCAN = 1.31206341e-02 eV/atom
STD_DH_R2SCAN = 1.46799370e-02 eV/atom
COV_DH_R2SCAN_LMP = 1.92475706e-04 (eV/atom)^2
DH_raw_R2SCAN = 0.25746292 eV/atom
MT_R2SCAN = 2436.10542406 K
STD_R2SCAN = 119.70131165 K
=== DFT corrections end ===
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2400 | 0 | 1 | 1
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2049.89 K
Uncertainty = 10877.25 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2049.8939384000000 10871.407327171290
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2400 0 1 1
2800 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 2000.0000000000000 K
next job: 4 MD duplicate(s) at 2400.0000000000000 K
2000, 2000, 4
Adaptive temp step = 100
2000
Start running job (temp, id) 2000 1100 ...
Using scale from current temperature folder: 1.0550000000000004
==============================
Iteration 1
Current scale = 1.0550000000000004
Pressure = 1400.999400
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1200 ...
Using scale from current temperature folder: 1.0550000000000004
==============================
Iteration 1
Current scale = 1.0550000000000004
Pressure = -274.259596
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1300 ...
Using scale from current temperature folder: 1.0550000000000004
==============================
Iteration 1
Current scale = 1.0550000000000004
Pressure = 4419.062930
Converged!
Now running full trajectory...
Completed!
==============================
2400, 2400, 4
Adaptive temp step = 100
2400
Start running job (temp, id) 2400 1100 ...
Using scale from current temperature folder: 1.0750000000000006
==============================
Iteration 1
Current scale = 1.0750000000000006
Pressure = -10078.985840
Step reduced to 0.005
New scale = 1.0700000000000007
==============================
Iteration 2
Current scale = 1.0700000000000007
Pressure = -1653.533990
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1200 ...
Using scale from current temperature folder: 1.0700000000000007
==============================
Iteration 1
Current scale = 1.0700000000000007
Pressure = 6589.167600
New scale = 1.0800000000000007
==============================
Iteration 2
Current scale = 1.0800000000000007
Pressure = -7688.657010
Step reduced to 0.005
New scale = 1.0750000000000008
==============================
Iteration 3
Current scale = 1.0750000000000008
Pressure = -10625.777030
New scale = 1.070000000000001
==============================
Iteration 4
Current scale = 1.070000000000001
Pressure = 3715.092660
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2400 1300 ...
Using scale from current temperature folder: 1.070000000000001
==============================
Iteration 1
Current scale = 1.070000000000001
Pressure = 5485.680880
New scale = 1.080000000000001
==============================
Iteration 2
Current scale = 1.080000000000001
Pressure = -4504.834580
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 4 | 0 | 4
2400 | 0 | 4 | 4
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2197.05 K
Uncertainty = 107.60 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2196.9986508460634 107.63542555634557
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 4 0 4
2400 0 4 4
2800 0 1 1
current fit
1 2196.9986508460634 107.63542555634557
possibilities:
current fit
0 2196.9986508460634 107.63542555634557
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ ------
1000/1 -6.969155 0.128309 995.405721 7.229306 1924.071669 0.00000003 up 3.430e-09 P1 (1)
1500/1 -6.901420 0.191942 1489.062765 7.174948 47321.197550 -0.00000574 down 3.680e-08 P1 (1)
2000/1 -6.757808 0.263918 2047.447700 7.806818 -12096.980755 -0.00001741 down 1.520e-07 P1 (1)
2000/2 -6.719112 0.257815 2000.097835 7.927934 -12046.114556 -0.00001107 down 3.740e-07 P1 (1)
2000/3 -6.774740 0.259457 2012.839605 7.799040 6273.642323 -0.00001364 down 5.190e-09 P1 (1)
2000/4 -6.758791 0.257610 1998.511450 7.713244 8110.405995 -0.00001236 down 1.520e-08 P1 (1)
2400/1 -6.553140 0.310556 2409.255415 8.699543 -18778.158190 -0.00000404 down 3.460e-06 P1 (1)
2400/2 -6.508522 0.313610 2432.953010 8.815610 1737.277175 0.00000248 up 1.780e-05 P1 (1)
2400/3 -6.534895 0.312065 2420.962895 8.667247 -5262.175735 0.00000307 up 3.560e-06 P1 (1)
2400/4 -6.504766 0.309222 2398.907800 8.832956 9774.866860 0.00000175 up 8.560e-06 P1 (1)
2800/1 -6.351187 0.360218 2794.529460 9.809458 20099.110690 0.00000118 up 6.670e-05 P1 (1)
500/1 -7.039542 0.063653 493.816369 7.115779 -2577.728375 0.00000026 up 3.030e-09 P1 (1)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 4 | 0 | 4
2400 | 0 | 4 | 4
2800 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2197.42 K
Uncertainty = 107.87 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/5106ec11-db40-49f5-82e6-a0424195cf02/Be2O2/Dir_lammps/cost_table.out
Collected 46 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 12
Total log files (incl. subruns) = 46
Total wall time = 3:01:52
Total seconds = 10912
Total GPU hours = 3.03
====================================
Be2 O2 1.0 2.6942772200000000 0.0000000000000000 0.0000000000000000 -1.3471376100000001 2.3333119199999999 0.0000000000000000 0.0000000000000000 0.0000000000000000 4.3760188900000001 Be O 2 2 direct 0.3333330000000000 0.6666670000000000 0.0001601700000000 Be 0.6666670000000000 0.3333330000000000 0.5001601700000000 Be 0.3333330000000000 0.6666670000000000 0.3773398300000000 O 0.6666670000000000 0.3333330000000000 0.8773398300000000 O
No output files have been received yet.