=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
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Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-4.5626879999999996 6.4526120000000002 -7.9028039999999997
-9.1253720000000005 -6.4526120000000002 -3.9999999970063982E-006
-4.5626879999999996 6.4526120000000002 7.9028039999999997
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.176 11.176 11.176 90.000 90.000 90.000
In UNIT-cell, number of atoms: 1 1 total: 2
Inverse Matrix is:
-3.6528167390066146E-002 -7.3056371757575594E-002 -3.6528204367509441E-002
5.1658672331042675E-002 -5.1658681901504230E-002 5.1658646184028587E-002
-6.3268682862437184E-002 0.0000000000000000 6.3268682862437184E-002
In SUPER-cell, number of atoms: 32 32 total: 64
POSCAR_STRCT atoms = 64
Accepted radius = 11 with 64 atoms
====================================================================================================
/data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps
['Na', 'Cl']
elements: ['Na', 'Cl']
counts: [32, 32]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 11130.403200
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = 4479.581024
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.01
==============================
Iteration 1
Current scale = 1.01
Pressure = 16882.566900
New scale = 1.02
==============================
Iteration 2
Current scale = 1.02
Pressure = 10835.840978
New scale = 1.03
==============================
Iteration 3
Current scale = 1.03
Pressure = 5057.790980
New scale = 1.04
==============================
Iteration 4
Current scale = 1.04
Pressure = 862.151435
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = 12502.378463
New scale = 1.05
==============================
Iteration 2
Current scale = 1.05
Pressure = 8861.497240
New scale = 1.06
==============================
Iteration 3
Current scale = 1.06
Pressure = 5649.703070
New scale = 1.07
==============================
Iteration 4
Current scale = 1.07
Pressure = 3705.506110
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 20183.740580
New scale = 1.08
==============================
Iteration 2
Current scale = 1.08
Pressure = 16075.189286
New scale = 1.09
==============================
Iteration 3
Current scale = 1.09
Pressure = 13586.061440
New scale = 1.1
==============================
Iteration 4
Current scale = 1.1
Pressure = 10954.976840
New scale = 1.11
==============================
Iteration 5
Current scale = 1.11
Pressure = 9425.301800
New scale = 1.12
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 2
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1007.98 K
Uncertainty = 7576.95 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1007.9760405000000 7610.8828950406469
500 1 0 1
1000 1 0 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1250.0000000000000 K
1250, 1250, 1
Adaptive temp step = 100
1250
Start running job (temp, id) 1250 1000 ...
Using closest available scale or default: 1.04
==============================
Iteration 1
Current scale = 1.04
Pressure = 7833.480460
New scale = 1.05
==============================
Iteration 2
Current scale = 1.05
Pressure = 3763.916010
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 1 | 0 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1274.99 K
Uncertainty = 7347.50 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1274.9873009999999 7342.8957470310752
500 1 0 1
1000 1 0 1
1250 1 0 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1375.0000000000000 K
1375, 1375, 1
Adaptive temp step = 100
1375
Start running job (temp, id) 1375 1000 ...
Using closest available scale or default: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 284.004420
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 2
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 1 | 0 | 1
1375 | 1 | 0 | 1
1500 | 0 | 1 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1387.72 K
Uncertainty = 7146.09 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1387.7171264999999 7138.4091550021330
500 1 0 1
1000 1 0 1
1250 1 0 1
1375 1 0 1
1500 0 1 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1375.0000000000000 K
next job: 4 MD duplicate(s) at 1500.0000000000000 K
1375, 1375, 4
Adaptive temp step = 100
1375
Start running job (temp, id) 1375 1100 ...
Using scale from current temperature folder: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 569.283449
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1375 1200 ...
Using scale from current temperature folder: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 1929.110879
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1375 1300 ...
Using scale from current temperature folder: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 948.275576
Converged!
Now running full trajectory...
Completed!
==============================
1500, 1500, 4
Adaptive temp step = 100
1500
Start running job (temp, id) 1500 1100 ...
Using scale from current temperature folder: 1.07
==============================
Iteration 1
Current scale = 1.07
Pressure = 5492.562810
New scale = 1.08
==============================
Iteration 2
Current scale = 1.08
Pressure = 2012.155900
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1500 1200 ...
Using scale from current temperature folder: 1.08
==============================
Iteration 1
Current scale = 1.08
Pressure = 1504.144770
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1500 1300 ...
Using scale from current temperature folder: 1.08
==============================
Iteration 1
Current scale = 1.08
Pressure = 1825.824629
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 7
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 1 | 0 | 1
1375 | 2 | 2 | 4
1500 | 0 | 4 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1331.81 K
Uncertainty = 186.60 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1330.9220189400505 185.88576138861237
500 1 0 1
1000 1 0 1
1250 1 0 1
1375 2 2 4
1500 0 4 4
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
next job: 4 MD duplicate(s) at 1500.0000000000000 K
next job: 4 MD duplicate(s) at 1250.0000000000000 K
next job: 4 MD duplicate(s) at 1375.0000000000000 K
1250, 1250, 4
Adaptive temp step = 100
1250
Start running job (temp, id) 1250 1100 ...
Using scale from current temperature folder: 1.05
==============================
Iteration 1
Current scale = 1.05
Pressure = 3816.464850
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1250 1200 ...
Using scale from current temperature folder: 1.05
==============================
Iteration 1
Current scale = 1.05
Pressure = 2662.901880
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1250 1300 ...
Using scale from current temperature folder: 1.05
==============================
Iteration 1
Current scale = 1.05
Pressure = 3302.259300
Converged!
Now running full trajectory...
Completed!
==============================
1375, 1375, 4
Adaptive temp step = 100
1375
1375, 1375, 4
Adaptive temp step = 100
1375
1500, 1500, 4
Adaptive temp step = 100
1500
1250, 1250, 4
Adaptive temp step = 100
1250
1375, 1375, 4
Adaptive temp step = 100
1375
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 7
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 4 | 0 | 4
1375 | 2 | 2 | 4
1500 | 0 | 4 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1375.51 K
Uncertainty = 40.17 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1375.7196218360057 40.073297230465535
500 1 0 1
1000 1 0 1
1250 4 0 4
1375 2 2 4
1500 0 4 4
2000 0 1 1
current fit
1 1375.7196218360057 40.073297230465535
possibilities:
current fit
0 1375.7196218360057 40.073297230465535
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ------
1000/1 -3.613807 0.127861 996.961132 25.425594 -223.546688 0.00000124 up 6.190e-08 P1 (1)
1250/1 -3.545412 0.158197 1233.499655 27.017859 2020.763454 0.00000540 up 1.520e-07 P1 (1)
1250/2 -3.554996 0.160759 1253.475700 27.051949 -235.476917 0.00000347 up 4.930e-08 P1 (1)
1250/3 -3.555837 0.160422 1250.853215 26.869107 -1441.941319 0.00000314 up 1.920e-07 P1 (1)
1250/4 -3.559339 0.160493 1251.400820 26.784550 -14.617937 0.00000296 up 9.680e-08 P1 (1)
1375/1 -3.510717 0.173521 1352.990285 28.013290 1454.469619 0.00000395 up 1.280e-06 P1 (1)
1375/2 -3.486701 0.173696 1354.354680 28.196664 5969.003990 0.00000780 up 1.110e-05 P1 (1)
1375/3 -3.496333 0.175085 1365.185110 28.394021 3299.383861 0.00000501 up 8.310e-07 P1 (1)
1375/4 -3.479014 0.169010 1317.815010 28.268280 6305.514843 0.00001000 up 6.120e-06 P1 (1)
1500/1 -3.424113 0.192568 1501.504060 29.648218 9014.372350 0.00001381 up 1.240e-04 P1 (1)
1500/2 -3.410853 0.193756 1510.767165 30.929943 5580.999585 0.00000491 up 7.330e-05 P1 (1)
1500/3 -3.414649 0.194734 1518.391790 29.943429 7881.854940 0.00001199 up 9.480e-05 P1 (1)
1500/4 -3.419401 0.192736 1502.808040 30.054559 7024.617780 0.00001294 up 7.980e-05 P1 (1)
2000/1 -3.320926 0.253599 1977.372610 34.620085 5151.266118 0.00000394 up 1.680e-04 P1 (1)
500/1 -3.699712 0.063815 497.582143 23.506045 -1037.886056 0.00000014 up 4.100e-08 P1 (1)
======================================================================================================================================================
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.csv
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 8
liquid = 7
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1250 | 4 | 0 | 4
1375 | 2 | 2 | 4
1500 | 0 | 4 | 4
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1375.78 K
Uncertainty = 40.16 K
====================================
Wrote /data/qhong7/qhong7/sluschi_auto/34dcf46d-c608-44f6-9f07-ed445f59d733/NaCl/Dir_lammps/cost_table.out
Collected 43 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 15
Total log files (incl. subruns) = 43
Total wall time = 3:04:13
Total seconds = 11053
Total GPU hours = 3.07
====================================
=== PBE correction ===
N rows with PBE energy = 12
MT_LMP = 1375.7822445080192
STD_LMP = 40.15820192890368
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -3.52995163
PBE_energy_eV_per_atom = -3.17932082
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -3.43784042
PBE_energy_eV_per_atom = -3.09725658
DH_LMP_raw_PBE = 0.09211121 eV/atom
DH_LMP_PBE = 0.05567141 eV/atom
DH_PBE = 0.04562443 eV/atom
Cp_solid_PBE = 2.24060406e-04 eV/atom/K
Cp_liquid_PBE = 2.13217254e-04 eV/atom/K
Cp_avg_PBE = 2.18638830e-04 eV/atom/K
DeltaT_PBE = 166.67 K
DH_raw_PBE = 0.08206423 eV/atom
MT_PBE = 1127.49587761 K
Na1 Cl1 1.0 3.4220150000000000 0.0000000000000000 1.9757019999999992 1.1406710000000000 3.2263060000000001 1.9757019999999992 0.0000000000000000 0.0000000000000000 3.9514019999999999 Na Cl 1 1 direct 0.0000000000000000 0.0000000000000000 0.0000000000000000 Na 0.5000000000000000 0.5000000000000000 0.5000000000000000 Cl
No output files have been received yet.