=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
0.0000000000000000 0.0000000000000000 13.867852839999999
4.9926472100000003 9.9852944200000007 0.0000000000000000
-9.9852944200000007 4.9926472100000003 0.0000000000000000
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
13.868 11.164 11.164 90.000 90.000 90.000
In UNIT-cell, number of atoms: 4 8 total: 12
Inverse Matrix is:
0.0000000000000000 4.0058908949026265E-002 -8.0117817898052529E-002
-0.0000000000000000 8.0117817898052529E-002 4.0058908949026265E-002
7.2109216295952572E-002 -0.0000000000000000 0.0000000000000000
In SUPER-cell, number of atoms: 40 80 total: 120
POSCAR_STRCT atoms = 120
Accepted radius = 11 with 120 atoms
====================================================================================================
/projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps
['Si', 'O']
elements: ['Si', 'O']
counts: [40, 80]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = 17282.589670
New scale = 1.01
==============================
Iteration 2
Current scale = 1.01
Pressure = 9264.233050
New scale = 1.02
==============================
Iteration 3
Current scale = 1.02
Pressure = 1136.461827
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 1.02
==============================
Iteration 1
Current scale = 1.02
Pressure = 4304.896140
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 1.02
==============================
Iteration 1
Current scale = 1.02
Pressure = 13358.298400
New scale = 1.03
==============================
Iteration 2
Current scale = 1.03
Pressure = 3697.502792
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.03
==============================
Iteration 1
Current scale = 1.03
Pressure = 2487.418140
Converged!
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2044.93 K
Uncertainty = 6603.26 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2044.9288524999999 6625.9265086375090
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 2800.0 K
2800, 2800, 1
Adaptive temp step = 100
2800
Start running job (temp, id) 2800 1000 ...
Using closest available scale or default: 1.03
==============================
Iteration 1
Current scale = 1.03
Pressure = -5309.202870
Step reduced to 0.005
New scale = 1.0250000000000001
==============================
Iteration 2
Current scale = 1.0250000000000001
Pressure = 8118.670550
Step reduced to 0.0025
New scale = 1.0275
==============================
Iteration 3
Current scale = 1.0275
Pressure = -2392.410339
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 0
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2859.99 K
Uncertainty = 9729.54 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2859.9890240000004 9760.2411624148517
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3600.0 K
3600, 3600, 1
Adaptive temp step = 100
3600
Start running job (temp, id) 3600 1000 ...
Using closest available scale or default: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = 2951.098871
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 2891.45 K
Uncertainty = 14285.97 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 2891.4451080000003 14295.659763000580
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3600 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 3200.0000000000000 K
3200, 3200, 1
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1000 ...
Using closest available scale or default: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = 2693.481880
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 7 folders
Wrote phase_pred.csv
Label counts:
solid = 6
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3200 | 1 | 0 | 1
3600 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 3278.76 K
Uncertainty = 13754.15 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 3278.7642790000000 13786.337214842921
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3200 1 0 1
3600 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 3200.0000000000000 K
next job: 4 MD duplicate(s) at 3600.0000000000000 K
3200, 3200, 4
Adaptive temp step = 100
3200
Start running job (temp, id) 3200 1100 ...
Using scale from current temperature folder: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = 5943.205890
New scale = 1.0375
==============================
Iteration 2
Current scale = 1.0375
Pressure = -7666.536730
Step reduced to 0.005
New scale = 1.0325000000000002
==============================
Iteration 3
Current scale = 1.0325000000000002
Pressure = 5930.929691
Step reduced to 0.0025
New scale = 1.0350000000000001
==============================
Iteration 4
Current scale = 1.0350000000000001
Pressure = 4122.332360
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1200 ...
Using scale from current temperature folder: 1.0350000000000001
==============================
Iteration 1
Current scale = 1.0350000000000001
Pressure = -610.023340
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3200 1300 ...
Using scale from current temperature folder: 1.0350000000000001
==============================
Iteration 1
Current scale = 1.0350000000000001
Pressure = -5574.531671
Step reduced to 0.005
New scale = 1.0300000000000002
==============================
Iteration 2
Current scale = 1.0300000000000002
Pressure = -516.667180
Converged!
Now running full trajectory...
Completed!
==============================
3600, 3600, 4
Adaptive temp step = 100
3600
Start running job (temp, id) 3600 1100 ...
Using scale from current temperature folder: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = 11528.479990
New scale = 1.0375
==============================
Iteration 2
Current scale = 1.0375
Pressure = 3540.897650
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3600 1200 ...
Using scale from current temperature folder: 1.0375
==============================
Iteration 1
Current scale = 1.0375
Pressure = -5117.749884
Step reduced to 0.005
New scale = 1.0325000000000002
==============================
Iteration 2
Current scale = 1.0325000000000002
Pressure = -3368.244300
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 3600 1300 ...
Using scale from current temperature folder: 1.0325000000000002
==============================
Iteration 1
Current scale = 1.0325000000000002
Pressure = 4115.929220
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 4
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3200 | 4 | 0 | 4
3600 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 3398.98 K
Uncertainty = 107.71 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 3399.0411410453189 107.82340182243081
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 1 0 1
2800 1 0 1
3200 4 0 4
3600 0 4 4
current fit
1 3399.0411410453189 107.82340182243081
possibilities:
current fit
0 3399.0411410453189 107.82340182243081
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------ ------------ ---------- ------------------ ---
1000/1 -7.782680 0.128430 997.732688 16.502284 -7101.896658 0.00000034 up 1.660e-07
1500/1 -7.718362 0.192146 1492.726695 16.286600 -3618.516624 -0.00000021 down 1.730e-07
2000/1 -7.623065 0.257530 2000.671560 16.134591 -1308.077143 -0.00000084 down 9.240e-10
2800/1 -7.534951 0.356504 2769.575840 16.042232 229.243932 -0.00001533 down 6.340e-08
3200/1 -7.373438 0.411566 3197.338845 15.705357 -4750.926961 -0.00000668 down 1.020e-06
3200/2 -7.372933 0.407997 3169.610935 15.826764 -56.761198 -0.00000374 down 7.690e-08
3200/3 -7.401594 0.407080 3162.487670 15.753000 -3557.747384 -0.00000298 down 3.190e-08
3200/4 -7.414524 0.411932 3200.179020 16.035245 190.304799 -0.00000224 down 1.490e-07
3600/1 -7.210098 0.463502 3600.814425 16.219251 6585.564669 -0.00000287 down 7.680e-06
3600/2 -7.246113 0.474498 3686.232985 16.418766 3564.266230 -0.00000757 down 9.100e-06
3600/3 -7.255366 0.467705 3633.461695 16.147429 -993.202698 0.00001330 up 7.440e-06
3600/4 -7.190408 0.463196 3598.430660 16.118569 2000.457147 -0.00000965 down 5.670e-06
500/1 -7.846657 0.064641 502.180184 16.547065 -5680.939771 0.00000009 up 1.300e-07
======================================================================================================================================================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/summary.out
Collected 13 folders
Wrote phase_pred.csv
Label counts:
solid = 9
liquid = 4
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 1 | 0 | 1
2800 | 1 | 0 | 1
3200 | 4 | 0 | 4
3600 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 3398.48 K
Uncertainty = 107.82 K
====================================
Wrote /projects/bhin/hqj/sluschi_auto/1f435ec6-72a0-463c-b857-d64d447f6d73/Si4O8/Dir_lammps/cost_table.out
Collected 37 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 13
Total log files (incl. subruns) = 37
Total wall time = 9:50:29
Total seconds = 35429
Total GPU hours = 9.84
====================================
=== PBE correction ===
N rows with PBE energy = 8
MT_LMP = 3398.4777402998425
STD_LMP = 107.82242651751959
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -7.39144813
PBE_energy_eV_per_atom = -7.40414171
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -7.23130229
PBE_energy_eV_per_atom = -7.24634200
DH_LMP_raw_PBE = 0.16014583 eV/atom
DH_LMP_PBE = 0.09621538 eV/atom
DH_PBE = 0.09386926 eV/atom
Cp_solid_PBE = 1.59826143e-04 eV/atom/K
Cp_liquid_PBE = 1.59826143e-04 eV/atom/K
Cp_avg_PBE = 1.59826143e-04 eV/atom/K
DeltaT_PBE = 400.00 K
DH_raw_PBE = 0.15779971 eV/atom
MT_PBE = 3315.60908734 K
Si4 O8 1.0 4.9926472100000003 0.0000000000000000 0.0000000000000000 -0.0000000000000000 4.9926472100000003 -0.0000000000000000 0.0000000000000000 0.0000000000000000 6.9339264199999997 Si O 4 8 direct 0.6986584000000000 0.6986584000000000 0.5000000000000000 Si 0.8013416000000000 0.1986583999999990 0.7500000000000000 Si 0.1986583999999990 0.8013416000000000 0.2500000000000000 Si 0.3013416000000000 0.3013416000000000 -0.0000000000000000 Si 0.8935685900000000 0.7613864500000000 0.3201084900000000 O 0.1064314100000000 0.2386135500000000 0.8201084900000000 O 0.7613864500000000 0.8935685900000000 0.6798915100000000 O 0.2613854500000000 0.6064314100000000 0.0701084900000000 O 0.2386135500000000 0.1064314100000000 0.1798915100000000 O 0.3935685900000000 0.7386135500000001 0.4298915100000000 O 0.6064314100000000 0.2613854500000000 0.9298915100000000 O 0.7386135500000001 0.3935685900000000 0.5701084900000000 O
No output files have been received yet.