=======================================================================================================
Solid and Liquid in Ultra Small Coexistence with Hovering Interfaces (SLUSCHI)
Developed and maintained by Qi-Jun Hong, with early research support from Axel van de Walle (2014-2020)
=======================================================================================================
Generating solid with radius = 11
*** Generate a supercell from the current unitcell ***
The supercell is:
-4.6613431199999988 6.5921378399999995 8.0736866999999997
8.5457972499999997 -2.1973792799999998 6.7280707199999998
5.4382361899999996 8.7895171199999993 -4.0368459000000003
|a|,|b|,|c|,theta(bc),theta(ac),theta(ab):
11.418 11.096 11.096 90.000 90.000 90.000
In UNIT-cell, number of atoms: 1 total: 1
Inverse Matrix is:
-3.5755052296674750E-002 6.9406904485993376E-002 4.4168015344004406E-002
5.0565300826849069E-002 -1.7846573712110507E-002 7.1386273804124600E-002
6.1929576732275234E-002 5.4643744175536968E-002 -3.2786246505322185E-002
In SUPER-cell, number of atoms: 102 total: 102
POSCAR_STRCT atoms = 102
Accepted radius = 11 with 102 atoms
====================================================================================================
/projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps
['Rh']
elements: ['Rh']
counts: [102]
Original Tm = 1000.0
New temp = 500
New temp_end = 2000
500, 2000, 1
Adaptive temp step = 500
500
Start running job (temp, id) 500 1000 ...
Using closest available scale or default: 1.0
==============================
Iteration 1
Current scale = 1.0
Pressure = -26546.237400
Step reduced to 0.005
New scale = 0.995
==============================
Iteration 2
Current scale = 0.995
Pressure = 2762.166738
Converged!
Now running full trajectory...
Completed!
==============================
1000
Start running job (temp, id) 1000 1000 ...
Using closest available scale or default: 0.995
==============================
Iteration 1
Current scale = 0.995
Pressure = 33651.616100
New scale = 1.005
==============================
Iteration 2
Current scale = 1.005
Pressure = -28607.649900
Step reduced to 0.005
New scale = 0.9999999999999999
==============================
Iteration 3
Current scale = 0.9999999999999999
Pressure = 761.779760
Converged!
Now running full trajectory...
Completed!
==============================
1500
Start running job (temp, id) 1500 1000 ...
Using closest available scale or default: 0.9999999999999999
==============================
Iteration 1
Current scale = 0.9999999999999999
Pressure = 82095.728600
New scale = 1.0099999999999998
==============================
Iteration 2
Current scale = 1.0099999999999998
Pressure = 27531.465380
New scale = 1.0199999999999998
==============================
Iteration 3
Current scale = 1.0199999999999998
Pressure = -16806.544320
Step reduced to 0.005
New scale = 1.015
==============================
Iteration 4
Current scale = 1.015
Pressure = 1245.897313
Converged!
Now running full trajectory...
Completed!
==============================
2000
Start running job (temp, id) 2000 1000 ...
Using closest available scale or default: 1.015
==============================
Iteration 1
Current scale = 1.015
Pressure = 50008.010000
New scale = 1.025
==============================
Iteration 2
Current scale = 1.025
Pressure = 6571.717550
New scale = 1.035
==============================
Iteration 3
Current scale = 1.035
Pressure = -29020.485900
Step reduced to 0.005
New scale = 1.03
==============================
Iteration 4
Current scale = 1.03
Pressure = -14097.865599
New scale = 1.0250000000000001
==============================
Iteration 5
Current scale = 1.0250000000000001
Pressure = 6571.717830
Step reduced to 0.0025
New scale = 1.0275
Now running full trajectory...
Completed!
==============================
500, 500, 1
Adaptive temp step = 100
500
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 4 folders
Wrote phase_pred.csv
Label counts:
solid = 3
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1514.74 K
Uncertainty = 7271.40 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1514.7393730000001 7274.7146967666222
500 1 0 1
1000 1 0 1
1500 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1750.0000000000000 K
1750, 1750, 1
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1000 ...
Using closest available scale or default: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = -25610.201560
Step reduced to 0.005
New scale = 1.0225000000000002
==============================
Iteration 2
Current scale = 1.0225000000000002
Pressure = -5953.584821
New scale = 1.0175000000000003
==============================
Iteration 3
Current scale = 1.0175000000000003
Pressure = 14597.346250
Step reduced to 0.0025
New scale = 1.0200000000000002
==============================
Iteration 4
Current scale = 1.0200000000000002
Pressure = 4983.339950
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 5 folders
Wrote phase_pred.csv
Label counts:
solid = 4
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1771.86 K
Uncertainty = 6957.88 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1771.8571099999999 6969.4066494669678
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 1 MD duplicate(s) at 1875.0000000000000 K
1875, 1875, 1
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1000 ...
Using closest available scale or default: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = -8225.861620
Step reduced to 0.005
New scale = 1.0225000000000002
==============================
Iteration 2
Current scale = 1.0225000000000002
Pressure = 13315.281875
Step reduced to 0.0025
New scale = 1.0250000000000001
==============================
Iteration 3
Current scale = 1.0250000000000001
Pressure = 2375.454981
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 6 folders
Wrote phase_pred.csv
Label counts:
solid = 5
liquid = 1
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
1875 | 1 | 0 | 1
2000 | 0 | 1 | 1
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1919.14 K
Uncertainty = 6708.37 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1919.1443015000000 6704.1534653274030
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
1875 1 0 1
2000 0 1 1
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 2000.0000000000000 K
1875, 1875, 4
Adaptive temp step = 100
1875
Start running job (temp, id) 1875 1100 ...
Using scale from current temperature folder: 1.0250000000000001
==============================
Iteration 1
Current scale = 1.0250000000000001
Pressure = 8091.990980
New scale = 1.0350000000000001
==============================
Iteration 2
Current scale = 1.0350000000000001
Pressure = -26444.518480
Step reduced to 0.005
New scale = 1.0300000000000002
==============================
Iteration 3
Current scale = 1.0300000000000002
Pressure = -13797.157900
New scale = 1.0250000000000004
==============================
Iteration 4
Current scale = 1.0250000000000004
Pressure = 8091.990950
Step reduced to 0.0025
New scale = 1.0275000000000003
==============================
Iteration 5
Current scale = 1.0275000000000003
Pressure = -2662.643665
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1200 ...
Using scale from current temperature folder: 1.0275000000000003
==============================
Iteration 1
Current scale = 1.0275000000000003
Pressure = -15399.243414
Step reduced to 0.005
New scale = 1.0225000000000004
==============================
Iteration 2
Current scale = 1.0225000000000004
Pressure = 9178.686420
Step reduced to 0.0025
New scale = 1.0250000000000004
==============================
Iteration 3
Current scale = 1.0250000000000004
Pressure = -2569.068480
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1875 1300 ...
Using scale from current temperature folder: 1.0250000000000004
==============================
Iteration 1
Current scale = 1.0250000000000004
Pressure = -2325.701870
Converged!
Now running full trajectory...
Completed!
==============================
2000, 2000, 4
Adaptive temp step = 100
2000
Start running job (temp, id) 2000 1100 ...
Using scale from current temperature folder: 1.0275
==============================
Iteration 1
Current scale = 1.0275
Pressure = -5843.182206
Step reduced to 0.005
New scale = 1.0225000000000002
==============================
Iteration 2
Current scale = 1.0225000000000002
Pressure = 14811.726130
Step reduced to 0.0025
New scale = 1.0250000000000001
==============================
Iteration 3
Current scale = 1.0250000000000001
Pressure = 4517.593987
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1200 ...
Using scale from current temperature folder: 1.0250000000000001
==============================
Iteration 1
Current scale = 1.0250000000000001
Pressure = 7329.049210
New scale = 1.0350000000000001
==============================
Iteration 2
Current scale = 1.0350000000000001
Pressure = -29745.859030
Step reduced to 0.005
New scale = 1.0300000000000002
==============================
Iteration 3
Current scale = 1.0300000000000002
Pressure = -9805.141882
New scale = 1.0250000000000004
==============================
Iteration 4
Current scale = 1.0250000000000004
Pressure = 7329.047390
Step reduced to 0.0025
New scale = 1.0275000000000003
==============================
Iteration 5
Current scale = 1.0275000000000003
Pressure = -2617.024117
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 2000 1300 ...
Using scale from current temperature folder: 1.0275000000000003
==============================
Iteration 1
Current scale = 1.0275000000000003
Pressure = -14373.536904
Step reduced to 0.005
New scale = 1.0225000000000004
==============================
Iteration 2
Current scale = 1.0225000000000004
Pressure = 8001.341400
Step reduced to 0.0025
New scale = 1.0250000000000004
==============================
Iteration 3
Current scale = 1.0250000000000004
Pressure = -5093.676048
Step reduced to 0.00125
New scale = 1.0237500000000004
==============================
Iteration 4
Current scale = 1.0237500000000004
Pressure = 2724.647220
Converged!
Now running full trajectory...
Completed!
==============================
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 12 folders
Wrote phase_pred.csv
Label counts:
solid = 7
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 1 | 0 | 1
1875 | 3 | 1 | 4
2000 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1881.52 K
Uncertainty = 501.90 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1881.5214709840002 512.02572054215227
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 1 0 1
1875 3 1 4
2000 0 4 4
=== Find next job to run ===
next job: 4 MD duplicate(s) at 1750.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
next job: 4 MD duplicate(s) at 2000.0000000000000 K
next job: 4 MD duplicate(s) at 1750.0000000000000 K
next job: 4 MD duplicate(s) at 1875.0000000000000 K
1750, 1750, 4
Adaptive temp step = 100
1750
Start running job (temp, id) 1750 1100 ...
Using scale from current temperature folder: 1.0200000000000002
==============================
Iteration 1
Current scale = 1.0200000000000002
Pressure = 13351.903910
New scale = 1.0300000000000002
==============================
Iteration 2
Current scale = 1.0300000000000002
Pressure = -26769.504210
Step reduced to 0.005
New scale = 1.0250000000000004
==============================
Iteration 3
Current scale = 1.0250000000000004
Pressure = -10752.671580
New scale = 1.0200000000000005
==============================
Iteration 4
Current scale = 1.0200000000000005
Pressure = 13351.903820
Step reduced to 0.0025
New scale = 1.0225000000000004
==============================
Iteration 5
Current scale = 1.0225000000000004
Pressure = 1973.066409
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1200 ...
Using scale from current temperature folder: 1.0225000000000004
==============================
Iteration 1
Current scale = 1.0225000000000004
Pressure = 6609.241140
New scale = 1.0325000000000004
==============================
Iteration 2
Current scale = 1.0325000000000004
Pressure = -32179.239600
Step reduced to 0.005
New scale = 1.0275000000000005
==============================
Iteration 3
Current scale = 1.0275000000000005
Pressure = -12222.604470
New scale = 1.0225000000000006
==============================
Iteration 4
Current scale = 1.0225000000000006
Pressure = 6609.241280
Step reduced to 0.0025
New scale = 1.0250000000000006
==============================
Iteration 5
Current scale = 1.0250000000000006
Pressure = -3453.326878
Converged!
Now running full trajectory...
Completed!
==============================
Start running job (temp, id) 1750 1300 ...
Using scale from current temperature folder: 1.0250000000000006
==============================
Iteration 1
Current scale = 1.0250000000000006
Pressure = -6787.974025
Step reduced to 0.005
New scale = 1.0200000000000007
==============================
Iteration 2
Current scale = 1.0200000000000007
Pressure = 13700.727000
Step reduced to 0.0025
New scale = 1.0225000000000006
==============================
Iteration 3
Current scale = 1.0225000000000006
Pressure = 3422.314950
Converged!
Now running full trajectory...
Completed!
==============================
1875, 1875, 4
Adaptive temp step = 100
1875
1875, 1875, 4
Adaptive temp step = 100
1875
2000, 2000, 4
Adaptive temp step = 100
2000
1750, 1750, 4
Adaptive temp step = 100
1750
1875, 1875, 4
Adaptive temp step = 100
1875
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 10
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 3 | 1 | 4
2000 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1904.02 K
Uncertainty = 45.97 K
====================================
jobs_to_run.out Jobs completed
=== running MPFit ===
Melting temperature and std error: 1903.7791221373420 45.464518012583532
500 1 0 1
1000 1 0 1
1500 1 0 1
1750 4 0 4
1875 3 1 4
2000 0 4 4
current fit
1 1903.7791221373420 45.464518012583532
possibilities:
current fit
0 1903.7791221373420 45.464518012583532
possibilities:
MP accuracy achieved. Stopping code...
summary.out
======================================================================================================================================================
folder poteng [eV/atom] kineng [eV/atom] temp [K] volume [Ang^3/atom] press [bar] energy_slope energy_dir diffusion [cm^2/s] spg
------ ---------------- ---------------- ----------- ------------------- ------------- ------------ ---------- ------------------ ---
1000/1 -7.204207 0.129335 1005.511479 14.574006 -1734.153056 0.00000015 up 1.740e-08
1500/1 -7.123377 0.190402 1480.269650 14.799124 4075.273453 -0.00000568 down 5.270e-08
1750/1 -7.095238 0.223293 1735.980125 14.702827 36533.521900 -0.00001383 down 4.040e-08
1750/2 -7.095129 0.223285 1735.918010 14.734529 31289.704150 -0.00001296 down 7.310e-09
1750/3 -7.096550 0.225575 1753.721020 14.678655 40009.732950 -0.00002210 down 1.480e-08
1750/4 -7.094275 0.222720 1731.523675 14.731284 31819.396000 -0.00001186 down 3.930e-08
1875/1 -7.061530 0.244874 1903.759380 14.885108 24575.028070 -0.00003038 down 5.060e-08
1875/2 -6.850493 0.239249 1860.026505 15.918757 -6143.399595 0.00000126 up 2.100e-05
1875/3 -7.075923 0.244351 1899.693555 14.778536 34842.738100 -0.00002001 down 5.180e-08
1875/4 -7.052577 0.240114 1866.750955 14.955542 17551.928673 -0.00002784 down 1.170e-07
2000/1 -6.743294 0.256477 1993.965905 16.478044 -12936.603020 0.00001085 up 5.280e-05
2000/2 -6.768629 0.254814 1981.040225 16.202058 3827.614300 0.00001717 up 3.410e-05
2000/3 -6.745095 0.255455 1986.019760 16.495335 -15922.646835 0.00000747 up 4.660e-05
2000/4 -6.760798 0.253941 1974.250115 16.271886 -380.392794 0.00001859 up 4.520e-05
500/1 -7.274609 0.064455 501.101420 14.336743 2129.324995 -0.00000019 down 1.400e-08
======================================================================================================================================================
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.csv
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/summary.out
Collected 15 folders
Wrote phase_pred.csv
Label counts:
solid = 10
liquid = 5
Wrote jobs_results.out
---------------------------------------------
Temp | Solid | Liquid | Total
---------------------------------------------
500 | 1 | 0 | 1
1000 | 1 | 0 | 1
1500 | 1 | 0 | 1
1750 | 4 | 0 | 4
1875 | 3 | 1 | 4
2000 | 0 | 4 | 4
---------------------------------------------
====================================
Melting Point Fit (MPFit)
====================================
Tm = 1904.07 K
Uncertainty = 45.43 K
====================================
Wrote /projects/bhin/hqj/sluschi_auto/1e813f0c-856f-4ca9-85d4-d40ca226d182/Rh/Dir_lammps/cost_table.out
Collected 70 log files
====================================
Computational cost summary:
Number of trajectories (temp/id) = 15
Total log files (incl. subruns) = 70
Total wall time = 36:15:08
Total seconds = 130508
Total GPU hours = 36.25
====================================
=== PBE correction ===
N rows with PBE energy = 12
MT_LMP = 1904.0713666479214
STD_LMP = 45.431163983437685
SOLID (PBE present only):
lammps_poteng_eV_per_atom = -7.07292976
PBE_energy_eV_per_atom = -7.04240333
LIQUID (PBE present only):
lammps_poteng_eV_per_atom = -6.78004078
PBE_energy_eV_per_atom = -6.75298903
DH_LMP_raw_PBE = 0.29288898 eV/atom
DH_LMP_PBE = 0.25275571 eV/atom
DH_PBE = 0.24928103 eV/atom
Cp_solid_PBE = 1.56073823e-04 eV/atom/K
Cp_liquid_PBE = 7.93018627e-04 eV/atom/K
Cp_avg_PBE = 2.34110735e-04 eV/atom/K
DeltaT_PBE = 171.43 K
DH_raw_PBE = 0.28941430 eV/atom
MT_PBE = 1877.89573540 K
Rh1 1.0 2.3306720699999999 0.0000000000000000 1.3456139400000000 0.7768910300000000 2.1973792799999998 1.3456139400000000 -0.0000000000000000 -0.0000000000000000 2.6912289000000000 Rh 1 direct 0.0000000000000000 0.0000000000000000 0.0000000000000000 Rh
No output files have been received yet.